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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QTVSLFIWLPESKQKTLFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRTHPVGKMADEMRKYEKDHPKVLFLES
SAIHDMMSSREEINALLIKNNIPIPNSFSVKSKEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFP
CLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILED
PILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQGNPLVVDVNVFPSYGGKVDFDWFVEKVALCYTE

The query sequence (length=311) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1z2n:X 311 311 1.0000 1.0000 1.0000 0.0 1z2o:X, 1z2p:X
2 2qb5:A 338 313 0.2958 0.2722 0.2939 8.14e-25 2q7d:A, 2q7d:B, 2qb5:B
3 8oxe:A 302 242 0.1897 0.1954 0.2438 9.37e-14
4 7tn8:A 281 191 0.1640 0.1815 0.2670 2.23e-13
5 7pup:A 479 187 0.1608 0.1044 0.2674 3.09e-11
6 3t99:A 327 49 0.0579 0.0550 0.3673 1.8 5bya:A, 5byb:A, 5dgh:A, 5dgi:A, 8g9e:A, 4hn2:A, 6n5c:A, 4nzm:A, 4nzn:A, 4nzo:A, 4q4c:A, 4q4d:A, 3t54:A, 3t7a:A, 3t9a:A, 3t9b:A, 3t9c:A, 3t9d:A, 3t9e:A, 3t9f:A
7 6ihd:B 304 42 0.0482 0.0493 0.3571 5.2 6ihd:A, 6ihe:A, 6ihe:B
8 1sgj:A 231 38 0.0418 0.0563 0.3421 6.0 1sgj:B, 1sgj:C
9 8q3b:I 105 44 0.0322 0.0952 0.2273 7.6 8q3k:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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