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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QTSTRWTPTTEQIKILKELYYNNAIRSPTADQIQKITARLRQFGKIEGKNVFYWFQNHKARERQKKRFN

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ryd:A 69 69 1.0000 1.0000 1.0000 9.93e-47 6ryd:B, 6ryd:E, 6ryd:F, 6ryi:A, 6ryi:B, 6ryi:C, 6ryi:D, 6ryi:E, 6ryl:A, 6ryl:B, 6ryl:C, 6ryl:D, 6ryl:E
2 6wig:A 84 66 0.6667 0.5476 0.6970 7.82e-30 6wig:B
3 3q9t:A 577 49 0.2029 0.0243 0.2857 0.50 3q9t:B, 3q9t:C, 5zu2:A, 5zu2:B, 5zu2:C, 5zu3:A, 5zu3:B, 5zu3:C
4 8isk:B 848 19 0.1159 0.0094 0.4211 1.6 8isk:A
5 6ayo:A 229 39 0.1739 0.0524 0.3077 2.3 6ayo:B, 6ayq:A, 6ayq:B, 6ayr:A, 6ayr:B, 6ayr:C, 6ayr:D, 6ays:A, 6ays:B, 6ays:C, 6ays:G, 6ays:D, 6ays:H, 6ays:E, 6ays:F, 6ayt:A, 6ayt:B, 6ayt:C, 6ayt:D
6 5hod:A 61 62 0.2754 0.3115 0.3065 2.5 5hod:D
7 2acl:H 244 22 0.1449 0.0410 0.4545 4.1 2acl:B, 2acl:D, 2acl:F, 5avi:A, 5avi:C, 5avl:A, 3fal:B, 3fal:D, 3fc6:B, 3fc6:D, 5hjs:A, 5hjs:B, 3ipq:A, 3ips:A, 3ips:B, 3ipu:A, 3ipu:B
8 5inj:A 355 28 0.1304 0.0254 0.3214 6.8 5k9m:A
9 7w8w:A 346 28 0.1304 0.0260 0.3214 7.3 7w8v:A, 7w8x:A, 7w8y:A
10 2oo0:A 419 22 0.1304 0.0215 0.4091 9.4 5bwa:A, 7odc:A, 2on3:A, 2on3:B, 2oo0:B, 7s3f:A, 7s3f:B, 7s3g:A, 7s3g:B, 7u6p:A, 7u6p:B, 7u6u:A, 7u6u:B, 4zgy:A
11 3rqg:C 212 21 0.1739 0.0566 0.5714 9.7 3ajm:B, 3rqe:C, 3rqf:A, 4tvq:C
12 8iff:A 868 18 0.1014 0.0081 0.3889 9.9 8f5z:B, 8f5z:A, 8iff:B, 8isj:A, 8isj:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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