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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQL
PGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLEQGQNVTAYFNADSVIIAT

The query sequence (length=137) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1o7l:B 256 137 0.9927 0.5312 0.9927 1.26e-97 1h9r:A, 1h9r:B, 1h9s:A, 1h9s:B, 1o7l:A, 1o7l:C, 1o7l:D
2 1h9m:A 141 139 0.3650 0.3546 0.3597 5.64e-17 1h9m:B
3 2jda:B 142 51 0.1095 0.1056 0.2941 0.25 2jd9:A, 2jda:A
4 1dhr:A 236 75 0.1387 0.0805 0.2533 1.4 1dir:A, 1dir:B, 1dir:C, 1dir:D, 1hdr:A
5 3mte:A 219 35 0.0949 0.0594 0.3714 3.1 3mte:B, 4ox9:Y, 3p2e:A, 3p2e:B, 3p2k:A, 3p2k:B, 3p2k:C, 3p2k:D, 3pb3:A, 3pb3:B
6 5crw:A 242 27 0.0803 0.0455 0.4074 6.1
7 3loq:A 273 67 0.1168 0.0586 0.2388 6.7 3loq:B
8 1fqt:A 109 28 0.0876 0.1101 0.4286 7.1 1fqt:B
9 4oli:A 539 85 0.1752 0.0445 0.2824 7.4 6aam:A, 7ax4:A, 7ax4:B, 5c03:A, 5c03:B, 6dbk:A, 6dbm:A, 5f1z:A, 5f20:A, 4gfo:A, 4gih:A, 4gii:A, 4gj2:A, 4gj3:A, 4gvj:A, 7k7o:A, 7k7o:B, 7k7q:A, 7k7q:B, 3lxn:A, 3lxp:A, 6nsl:A, 6nsl:B, 3nyx:A, 3nz0:A, 6nze:A, 6nze:B, 6nzf:A, 6nzf:B, 6nzh:A, 6nzh:B, 6nzp:A, 6nzp:B, 6nzq:A, 6nzq:B, 6nzr:A, 6nzr:B, 6ova:A, 4py1:A, 8s98:A, 8s98:B, 8s98:C, 8s99:A, 8s99:B, 8s99:C, 8s9a:A, 8s9a:B, 8s9a:C, 8tb5:A, 8tb5:B, 8tb6:A, 8tb6:B, 5tkd:A, 5tkd:B, 7uyr:A, 7uys:A, 7uyt:A, 7uyu:A, 6vns:A, 6vnv:A, 6vnx:A, 6vny:A, 5wal:A, 4wov:A, 4wov:B, 6x8f:A, 6x8f:C, 6x8g:A, 3zon:A
10 2j0w:A 447 36 0.0876 0.0268 0.3333 7.6 2j0x:A, 2j0x:B
11 6sga:FA 579 44 0.1022 0.0242 0.3182 8.4 6sgb:FA
12 6nor:A 349 66 0.1460 0.0573 0.3030 8.7 6nor:B, 6nor:C, 6nor:D, 6nor:E, 6nor:F
13 1sf2:A 425 46 0.1095 0.0353 0.3261 8.7 1sf2:B, 1sf2:C, 1sf2:D, 1sff:A, 1sff:B, 1sff:C, 1sff:D, 1szk:A, 1szk:B, 1szk:C, 1szk:D, 1szs:A, 1szs:B, 1szs:C, 1szs:D, 1szu:A, 1szu:B, 1szu:C, 1szu:D
14 5tuk:B 373 39 0.1022 0.0375 0.3590 8.8 5tuk:A, 5tuk:C, 5tuk:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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