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BioLiP
>protein
QTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNM
ASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPQVTREHREMLVKLAKQNTNKAKDSLRKVRTNSMNKLKKSKDTVSE
DTIRLIEKQISQMADDTVAELDRHLAVKTKELL

The query sequence (length=193) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6nu2:z 204 193 1.0000 0.9461 1.0000 6.39e-139 7l08:z, 7l20:z, 7nsh:BG, 7nsi:BG, 6zs9:A5
2 4kdd:A 184 180 0.2746 0.2880 0.2944 1.21e-17
3 3j0e:G 185 178 0.2746 0.2865 0.2978 2.16e-17 6ucq:1w, 6ucq:2w, 4v54:B6, 4v54:D6, 4v55:B6, 4v55:D6, 4v5a:AY, 4v5a:CY, 4v5y:B6, 4v5y:D6
4 1ek8:A 185 188 0.2953 0.3081 0.3032 2.61e-17 4v9c:CY, 4v9d:AY, 4woi:AV, 1zn0:A
5 6eri:Az 191 174 0.2539 0.2565 0.2816 6.35e-14
6 7pau:7 182 166 0.2073 0.2198 0.2410 1.21e-10
7 4xmp:G 337 50 0.0933 0.0534 0.3600 0.22
8 1y69:8 113 79 0.1192 0.2035 0.2911 0.37
9 1adj:A 420 41 0.0777 0.0357 0.3659 1.7 1adj:B, 1adj:C, 1adj:D, 1ady:A, 1ady:B, 1ady:C, 1ady:D, 4rdx:A
10 2p0a:A 298 61 0.0933 0.0604 0.2951 2.7 2p0a:B
11 8ohd:A 692 23 0.0674 0.0188 0.5652 3.6 8oj0:A, 8oj5:A, 8oj8:A
12 8bx8:A 4453 38 0.0881 0.0038 0.4474 4.1 7k58:A, 7k5b:A, 7kek:A
13 9b8t:A 1146 23 0.0622 0.0105 0.5217 6.2 9b8s:A, 9f6d:A, 9f6e:A, 9f6f:A, 9f6i:A, 9f6j:A, 9f6k:A, 9f6l:A
14 4pyg:A 685 86 0.0984 0.0277 0.2209 7.1 6a8p:A, 6a8p:B, 6a8p:C, 9bc3:A, 9bc3:B, 9bc4:A, 1kv3:A, 1kv3:B, 1kv3:C, 1kv3:D, 1kv3:E, 1kv3:F, 6kzb:A, 6kzb:B, 3ly6:A, 3ly6:B, 3ly6:C, 4pyg:B, 4pyg:E, 8tr9:A
15 6chs:H 550 72 0.1140 0.0400 0.3056 7.4 6chs:I, 6chs:J, 6chs:D, 6chs:E, 6chs:F
16 5vc7:A 544 39 0.0881 0.0312 0.4359 8.1 5vc7:C, 5vc7:D, 5vc7:E, 5vc7:F, 5vc7:G
17 6opc:B 741 47 0.0777 0.0202 0.3191 9.5 8dar:A, 8dar:B, 8dar:C, 8dar:D, 8dar:E, 8dar:F, 8das:A, 8das:B, 8das:C, 8das:D, 8das:E, 8das:F, 8dat:A, 8dat:B, 8dat:C, 8dat:D, 8dat:E, 8dat:F, 8dau:A, 8dau:B, 8dau:C, 8dau:D, 8dau:E, 8dau:F, 8dav:A, 8dav:B, 8dav:C, 8dav:D, 8dav:E, 8dav:F, 8daw:A, 8daw:B, 8daw:C, 8daw:D, 8daw:E, 8daw:F, 6oa9:A, 6oa9:B, 6oa9:C, 6oa9:E, 6oa9:F, 6oaa:B, 6oaa:C, 6oaa:D, 6oab:D, 6oab:B, 6oab:C, 6oab:A, 6omb:A, 6omb:B, 6omb:C, 6omb:D, 6omb:E, 6opc:A, 6opc:C, 6opc:D, 6opc:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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