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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR
DVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARIL
LTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKR
LMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGL
VLSSIGYKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSGPR
PGSAFIKALLDSRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEMLRLLGH

The query sequence (length=456) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1e6e:A 457 456 1.0000 0.9978 1.0000 0.0 1cjc:A, 1e1k:A, 1e1l:A, 1e1m:A, 1e1n:A, 1e6e:C
2 1lqt:B 454 463 0.4101 0.4119 0.4039 4.95e-96 2c7g:A, 1lqt:A, 1lqu:A, 1lqu:B
3 4ylf:B 468 166 0.1228 0.1197 0.3373 1.46e-14 4ylf:D, 4yry:B, 4yry:D
4 5jca:L 471 161 0.1009 0.0977 0.2857 2.31e-11 5jfc:L
5 7mfm:I 490 120 0.0768 0.0714 0.2917 1.98e-09 7mfm:J, 7mft:I
6 5vj7:A 462 233 0.1404 0.1385 0.2747 1.16e-08
7 8oh5:C 1172 120 0.0811 0.0316 0.3083 1.00e-07 8oh5:F, 8oh5:I, 8oh5:L, 8oh9:C, 8oh9:F, 8oh9:I, 8oh9:L
8 6s6t:E 472 138 0.0768 0.0742 0.2536 8.80e-04 6s6s:G, 6s6s:E, 6s6s:F, 6s6s:H, 6s6t:F, 6s6t:G, 6s6u:G, 6s6u:H, 6s6u:I, 6s6u:J, 6s6x:G, 6s6x:H, 6s6x:I, 6s6x:J, 6s6x:K, 6s6x:L, 2vdc:G, 2vdc:H, 2vdc:I, 2vdc:J, 2vdc:K, 2vdc:L
9 1f8w:A 447 190 0.0987 0.1007 0.2368 0.003 1joa:A, 1nhp:A, 1nhq:A, 1nhr:A, 1nhs:A, 1npx:A, 2npx:A
10 2gv8:A 442 42 0.0285 0.0294 0.3095 1.9 2gv8:B, 2gvc:A, 2gvc:B, 2gvc:D, 2gvc:E, 1vqw:A, 1vqw:B
11 6ppr:B 760 45 0.0351 0.0211 0.3556 2.1 6ppu:B
12 8aq8:AAA 344 34 0.0307 0.0407 0.4118 5.6 8aq8:BBB, 8aq8:CCC, 8aq8:DDD
13 1vdc:A 322 66 0.0439 0.0621 0.3030 7.4
14 4emj:A 406 140 0.0702 0.0788 0.2286 7.8 3ef6:A, 4emi:A
15 1iug:A 348 53 0.0307 0.0402 0.2642 8.8 1iug:B
16 8qqp:A 464 40 0.0329 0.0323 0.3750 9.7 8q65:A, 8q65:E, 8qqp:B, 8qqp:C, 8qqp:D, 8qqp:E, 8qqp:F, 8qqp:G, 8qqp:H, 8qqq:A, 8qqq:B, 8qqq:C, 8qqq:D, 8qqq:E, 8qqq:F, 8qqq:G, 8qqq:H, 8qqr:A, 8qqr:B, 8qqr:C, 8qqr:D, 8qqr:E, 8qqr:F, 8qqr:G, 8qqr:H, 8qqt:A, 8qqt:B, 8qqt:C, 8qqt:D, 8qqt:E, 8qqt:F, 8qqt:G, 8qqt:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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