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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QTNPYKLMDEAAQKTFDRLKNEQPQIRANPDYLRTIVDQELLPYVQVKYAGALVLGQYYKSATPAQREAYFAAFREYLKQ
AYGQALAMYHGQTYQIAPEQPLGDKTIVPIRVTIIDPNGRPPVRLDFQWRKNSQTGNWQAYDMIAEGVSMITTKQNEWGT
LLRTKGIDGLTAQLKSISQQKITLE

The query sequence (length=185) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5uwa:A 185 185 1.0000 1.0000 1.0000 3.60e-137 5uwa:B
2 8dte:A 172 138 0.2270 0.2442 0.3043 2.77e-15
3 6hsy:A 190 147 0.1946 0.1895 0.2449 1.58e-05
4 8r5n:A 165 54 0.0919 0.1030 0.3148 0.78 8r5n:B, 8r6a:A, 8r6a:B, 8r6b:A
5 2erj:B 204 38 0.0811 0.0735 0.3947 0.95 2erj:F, 5m5e:B, 7s2s:B, 7s2s:D
6 8rta:E 169 44 0.0757 0.0828 0.3182 1.2
7 5go5:A 152 69 0.1081 0.1316 0.2899 1.4
8 4rkc:A 398 74 0.0919 0.0427 0.2297 2.0 4rkc:B, 4rkd:A, 4rkd:B, 4rkd:C, 4rkd:D, 4rkd:E, 4rkd:F, 4rkd:G, 4rkd:H, 6t3v:A, 6zup:B, 6zup:A, 6zur:B, 6zur:A, 6zvg:A, 6zvg:B, 6zvg:C, 6zvg:D
9 1v5y:A 217 83 0.1297 0.1106 0.2892 3.8 1v5y:B, 1v5z:A, 1v5z:B, 1vfr:A, 1vfr:B
10 8a3t:B 440 61 0.0973 0.0409 0.2951 3.8 4bh6:F, 4bh6:E, 4bh6:G, 4bh6:H
11 6b9v:A 254 86 0.1514 0.1102 0.3256 5.4 6b9v:B
12 3ff1:B 444 70 0.1027 0.0428 0.2714 6.1
13 5jwz:A 724 87 0.1243 0.0318 0.2644 7.1 5jwz:B
14 6dju:F 531 56 0.0919 0.0320 0.3036 7.8 6w6g:F
15 6w6i:F 605 56 0.0919 0.0281 0.3036 8.2 6w6j:F
16 7pay:A 329 37 0.0811 0.0456 0.4054 8.8 7pax:A, 7pb0:A, 7pb1:A, 6w2l:A, 6z1n:A
17 1qs0:A 407 29 0.0486 0.0221 0.3103 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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