Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QTLHAPHCEVGCAANVARRVGVDLARQVIGAHWASRMLVREVGTFPQPLLDRTQVTFSAQGEGWPALLARMTGGEVTSRH
VPREELLSTLHADRAEGGTLLFMEDRACPWLDSAHSPGMLPHVVVPDGVAPDGSWQLIEGHSWWRGRYAMSEQDLLAASY
PDPDPHHVAGRVLSLRIRPSAERAAQLDTLARQELAAGLRTYLAAECGETETPAGRIVWANGPQSVPLLVERLRGWDYLC
PLAARNDLSTEHARDVALGRYLFLALTDELAFAAYARAGTLRLVEGLGLAGAVGGLRPDEAWRLAWRSGQKLYRRLDRQN
LSALFSALEKAAEVDVEYARRLLKEL

The query sequence (length=346) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7yn2:A 346 346 1.0000 1.0000 1.0000 0.0 7yn3:A, 7yn3:B
2 4bqf:B 827 227 0.1503 0.0629 0.2291 0.049 4bqe:A, 4bqe:B, 4bqf:A, 4bqi:A, 4bqi:B
3 1vdn:A 161 58 0.0491 0.1056 0.2931 0.050
4 1qng:A 170 84 0.0578 0.1176 0.2381 1.4 1qnh:A, 1qnh:B
5 2poy:B 172 30 0.0347 0.0698 0.4000 2.0 2poy:A, 2poy:C
6 5qu2:A 56 26 0.0260 0.1607 0.3462 2.9 5qu2:B
7 4ato:A 168 30 0.0318 0.0655 0.3667 3.5
8 5yke:B 845 51 0.0549 0.0225 0.3725 4.0 6jb3:B, 5yke:D, 5yke:F, 5yke:H
9 6wou:A 3921 147 0.1040 0.0092 0.2449 4.3 6wou:B, 6wou:C, 6wou:D, 6wov:A, 6wov:B, 6wov:C, 6wov:D
10 8dty:A 4004 147 0.1040 0.0090 0.2449 4.3 8dty:B, 8dty:C, 8dty:D
11 8dtz:A 4061 147 0.1040 0.0089 0.2449 4.3 8dtz:B, 8dtz:C, 8dtz:D
12 5ykf:B 1309 51 0.0549 0.0145 0.3725 4.9 5ykf:D, 5ykf:F, 5ykf:H, 5ykg:B, 5ykg:D, 5ykg:F, 5ykg:H, 5yw8:B, 5yw8:D, 5yw8:F, 5yw8:H, 5yw9:B, 5yw9:D, 5yw9:F, 5yw9:H, 5ywa:B, 5ywa:D, 5ywa:F, 5ywa:H
13 6jb1:B 1366 51 0.0549 0.0139 0.3725 5.1 6jb1:D, 6jb1:F, 6jb1:H, 7wit:A, 5yw7:B, 5ywd:B
14 6c3o:E 1290 51 0.0549 0.0147 0.3725 5.3 6c3o:H, 6c3o:G, 6c3o:F
15 5f4z:D 391 268 0.1792 0.1586 0.2313 5.4 5f4z:A, 5f4z:B, 5f4z:C, 5f4z:E
16 6c3p:E 1359 51 0.0549 0.0140 0.3725 5.4 6c3p:H, 6c3p:G, 6c3p:F, 5ywb:B, 5ywb:D, 5ywb:F, 5ywb:H, 5ywc:B, 5ywc:D, 5ywc:F, 5ywc:H
17 7s5x:E 1412 51 0.0549 0.0135 0.3725 5.4 6pz9:C, 7s5v:E, 7s5y:E, 7s5z:E, 7s60:E, 7s61:E, 8ti1:E, 8ti1:H, 8ti1:G, 8ti1:F, 8ti2:E, 8ti2:H, 8ti2:G, 8ti2:F, 7w4o:B, 7w4o:D, 7w4o:F, 7w4o:H, 7w4p:B, 7w4p:D, 7w4p:F, 7w4p:H
18 4e2x:A 405 115 0.0954 0.0815 0.2870 6.3 4e2w:A, 4e2y:A, 4e2z:A, 4e30:A, 4e31:A, 4e32:A, 4e33:A, 3ndi:A, 3ndj:A
19 6baa:E 1317 51 0.0549 0.0144 0.3725 8.0 6baa:F, 6baa:G, 6baa:H
20 7u1s:E 1439 51 0.0549 0.0132 0.3725 8.2 6pza:C, 6pzi:G, 7tys:E, 7tyt:E, 7u1e:E, 7u1q:E, 7u24:E, 7u2x:E, 7u6y:E, 7u7m:E, 7uaa:E
21 8kcc:K 508 30 0.0376 0.0256 0.4333 9.1 8j90:K, 8kcb:K, 8wh5:K, 8wh8:K, 8wh9:K, 8wha:K, 8wha:L

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218