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BioLiP
>protein
QTLEGRYASALFRVAKKKNQLEKVYGDLESVRNALKDSSEFRLFVDSPAVSVQQKLDVLRQLVNRYKFDPLTGNLLTTLV
ENKRLPMLARVADAFDAMYRKEKGEVKCLVTSAKPLSAQQQKEIVAALQNRAGTQARLIIDYAVSPQIMGGLVVRLGEQV
LDFSVATRLDRLQSQLLAPL

The query sequence (length=180) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6tmi:G 180 180 1.0000 1.0000 1.0000 2.12e-129
2 6z1u:S 187 170 0.3389 0.3262 0.3588 6.31e-29 2jmx:A
3 7nkl:d 327 74 0.1333 0.0734 0.3243 1.26e-04
4 8adg:A 787 39 0.0833 0.0191 0.3846 0.76 8adi:A, 8bvq:A, 6lyq:A, 6lyr:A, 7nre:A, 7nrf:A, 7nri:A, 7p1c:A, 8pzu:A, 8pzv:A, 2qdf:A, 6qgw:A, 6qgx:A, 6qgy:C, 7r1w:A, 7tsz:A, 7tt0:A, 7tt1:A, 7tt2:A, 7tt3:A, 7tt4:A, 7ttc:A
5 7ayx:B 396 85 0.1333 0.0606 0.2824 1.4 7ayx:A
6 5u6k:E 191 60 0.0944 0.0890 0.2833 2.2 5u6k:A, 5u6k:B, 5u6k:C, 5u6k:D
7 7c1e:A 342 33 0.0611 0.0322 0.3333 2.7 7c1e:B, 7c3v:A, 5z2x:A, 5z2x:B, 8zav:A, 8zav:B, 5zec:A, 5zec:B, 5zed:A, 5zed:B
8 7xi4:A 283 73 0.1167 0.0742 0.2877 3.9 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
9 6m0r:A 750 72 0.1278 0.0307 0.3194 6.7 7tao:A
10 4bet:A 480 113 0.1667 0.0625 0.2655 8.3 4bep:A, 4ber:A, 4ber:B, 4bes:A, 4bet:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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