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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QTKIQKYAGTAMPYPNRTGMTPFYINHLGRHGARFPTSRKALDKVEKVLVSAQQENGLTSEGMALLSMIRRLSRLFDGQW
GKLSKLGETEQEGIAGRMIRNYPQLFSNSAKIEAIATYVPRSINSMDAFLSCMIRHNPALQVQRSEGKQYNHILRFFDLN
KSYVNYKEKGDWLPIYKAFVHKKISPVPIMKKFLLNPEQYLDKEAEEFVMALFSVAAILPDTSIPLNLEDLFTLDEWHRY
WQTQNLRQYMSKSSAPVGKMLPVAIAWPLLSEFIRSAQEVISGKSDYQANFRFAHAETVIPFVSLMGIEKTDVQVCRPDS
VSVYWKDYEISPMAANVQWLFYRDRDQRIWVKILLNEEAAALPISTACFPYYSWEKTRIFFNQRIEMAKKTLSVFN

The query sequence (length=396) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4fdt:A 398 397 1.0000 0.9950 0.9975 0.0 4fdt:B, 4fdu:A, 4fdu:B
2 7r5y:E 414 374 0.2576 0.2464 0.2727 2.14e-43 7r5y:A, 7r5y:B, 7r5y:C, 7r5y:D, 7r5y:F
3 7zgh:A 413 384 0.2500 0.2397 0.2578 1.52e-20 7zgh:B
4 6rxd:A 509 187 0.1313 0.1022 0.2781 2.67e-13 6rxd:B, 6rxe:A, 6rxe:B, 6rxf:A, 6rxf:B, 6rxg:A, 6rxg:B
5 6rxd:A 509 104 0.0631 0.0491 0.2404 0.28 6rxd:B, 6rxe:A, 6rxe:B, 6rxf:A, 6rxf:B, 6rxg:A, 6rxg:B
6 3k4q:A 438 270 0.1641 0.1484 0.2407 0.050 3k4q:B
7 6ywe:C 307 143 0.1010 0.1303 0.2797 0.38 6yws:C, 6ywv:C, 6ywx:C, 6ywy:C
8 4pht:Y 226 87 0.0657 0.1150 0.2989 0.41 4pht:X, 4pht:Z
9 1sk8:A 435 270 0.1591 0.1448 0.2333 3.1 1sk9:A
10 5xpd:A 269 91 0.0556 0.0818 0.2418 3.9
11 4cej:B 1156 33 0.0354 0.0121 0.4242 4.3 4ceh:B, 4cei:B, 3u44:B, 3u4q:B
12 3it3:A 337 96 0.0581 0.0682 0.2396 5.4 4e3w:A, 4e3w:B, 3it0:A, 3it0:B, 3it3:B
13 6j9b:A 106 70 0.0505 0.1887 0.2857 6.3 6j9b:D
14 5x20:A 312 69 0.0505 0.0641 0.2899 6.4 3wfj:A, 3wfj:B, 3wfj:C, 3wfj:D, 3wfj:E, 3wfj:G, 5x20:B, 5x20:C, 5x20:D, 5x20:E
15 2v9k:A 467 61 0.0556 0.0471 0.3607 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218