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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QTIKIGAQSMSESEIIASMLGQLIEHHTDLKTTTIKNLGSNAVQQQALMNGEIDIAATRYTGDALTGTLRMEPEKDPDKA
LALTQREFKKRYDLKWYDSYGFDNTYAFTVSKELADQYHLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTKTYGMTF
GGTYPMQIGLVYDAVKSGKMDIVLAYSTDGRIKSYGLKMLKDDKQFFPPYDCSPVVPEKVLKEHPELEGIIKKMLGKIDT
ATMQELNYEVDGNLKEPSVVAKEYLEKHRYFE

The query sequence (length=272) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6eyh:A 280 272 0.9963 0.9679 0.9963 0.0 6eyl:A, 6eyl:B, 5nxy:A, 5nxy:C, 3r6u:A
2 3ppo:A 272 271 0.7243 0.7243 0.7269 2.11e-150 3ppo:B, 3ppq:A, 3ppq:B, 3ppr:A, 3ppr:B
3 7s7x:A 278 270 0.3787 0.3705 0.3815 5.79e-61 7s7x:B, 7s7x:C, 6v1r:A
4 7txl:A 275 270 0.3456 0.3418 0.3481 1.49e-46 7txk:A, 7txk:B, 7txl:B
5 7s7t:A 509 192 0.2757 0.1473 0.3906 1.75e-44 8i4o:A, 8i4o:C, 8i4o:E, 8i4o:G, 8i4o:I, 8i4o:K
6 7s7t:A 509 102 0.1250 0.0668 0.3333 7.08e-06 8i4o:A, 8i4o:C, 8i4o:E, 8i4o:G, 8i4o:I, 8i4o:K
7 8dp7:A 265 264 0.3162 0.3245 0.3258 8.91e-42 8dp7:B, 8dp7:C, 8dp7:D, 8dp7:E
8 1sw1:A 270 270 0.2904 0.2926 0.2926 8.39e-31 1sw1:B, 1sw4:A, 1sw4:B
9 2oje:D 214 75 0.0735 0.0935 0.2667 6.8 2icw:G, 2icw:H, 2oje:H, 1r5i:D, 1r5i:H
10 3p0j:A 657 48 0.0551 0.0228 0.3125 8.0 3p0h:B, 3p0i:B, 3p0j:B
11 5usf:A 682 48 0.0551 0.0220 0.3125 8.3 3p0h:A, 3p0i:A, 3p0j:C, 3p0j:D, 5usf:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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