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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGM
ILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQAL
FITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWH
FVDVVWLFLYVSIYWWGS

The query sequence (length=258) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3abk:C 259 258 1.0000 0.9961 1.0000 0.0 3abk:P, 3abl:C, 3abl:P, 3abm:C, 3abm:P, 3ag1:C, 3ag2:C, 3ag2:P, 3ag3:C, 3ag4:C, 3ag4:P, 5b1a:C, 5b1a:P, 5b1b:C, 5b1b:P, 5b3s:C, 5b3s:P, 7coh:C, 7coh:P, 7cp5:C, 7cp5:P, 8d4t:P, 7d5w:C, 7d5w:P, 7d5x:C, 7d5x:P, 2dyr:C, 2dyr:P, 2dys:C, 2dys:P, 2eij:C, 2eij:P, 2eik:C, 2eik:P, 2eil:C, 2eil:P, 2eim:C, 2eim:P, 2ein:C, 2ein:P, 7ev7:C, 7ev7:P, 8gbt:C, 8gcq:C, 8gvm:C, 8gvm:P, 8h8r:C, 8h8r:P, 8h8s:C, 8h8s:P, 8ijn:C, 8ijn:P, 6j8m:C, 6j8m:P, 6juw:C, 6juw:P, 6jy3:C, 6jy4:C, 6nmf:C, 6nmf:P, 6nmp:C, 7thu:C, 7thu:P, 7tie:C, 7tie:P, 7tih:C, 7tih:P, 7tii:C, 7tii:P, 7vuw:C, 7vuw:P, 7vvr:C, 7vvr:P, 7w3e:C, 7w3e:P, 5wau:C, 5wau:c, 3x2q:C, 3x2q:P, 5xdq:C, 5xdq:P, 5xdx:C, 5xdx:P, 7xma:C, 7xma:P, 7xmb:C, 7xmb:P, 7y44:P, 7ypy:C, 7ypy:P, 5z84:C, 5z84:P, 5z85:C, 5z85:P, 5z86:C, 5z86:P, 5zco:C, 5zco:P, 5zcp:C, 5zcp:P, 5zcq:C, 5zcq:P, 2zxw:C, 2zxw:P
2 6giq:c 262 259 0.4457 0.4389 0.4440 2.72e-79
3 6adq:G 203 180 0.2558 0.3251 0.3667 3.37e-24 6adq:S, 7e1v:G, 7e1v:S, 8ovc:S, 8ovc:J, 7rh5:S, 7rh5:X, 7rh6:S, 7rh6:X, 7rh7:S, 7rh7:X
4 2yev:A 780 192 0.2597 0.0859 0.3490 3.05e-22 2yev:D
5 1n7v:A 533 45 0.0698 0.0338 0.4000 6.5
6 1n7u:A 554 45 0.0698 0.0325 0.4000 6.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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