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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QSYPVERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHANSAVVTASIDSVDFKSSATVGDALELEGFVTH
TGRTSMEVYVRVHSNNLLTGERTLTTESFLTMVAVDESGKPKPVPQVEPQTEEEKRLYETAPARKENRKKR

The query sequence (length=151) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1vpm:A 155 151 1.0000 0.9742 1.0000 2.99e-110 1vpm:B, 1vpm:C
2 7cz3:A 168 143 0.4702 0.4226 0.4965 6.76e-44 7cz3:B, 7cz3:C, 7cz3:D, 7cz3:E, 7cz3:F
3 5egj:A 167 144 0.4636 0.4192 0.4861 1.79e-43 5egl:A, 5egl:B, 5egl:C
4 1y7u:A 164 144 0.4238 0.3902 0.4444 3.78e-38 1y7u:B, 1y7u:C
5 4ien:A 154 136 0.3444 0.3377 0.3824 1.92e-28 4ien:B, 4ien:C, 4ien:D, 5szu:A, 5szu:B, 5szu:D, 5szv:A, 5szv:B, 5szv:C, 5szv:D, 5szy:A, 5szy:B, 5szy:D, 5szy:C, 5szz:A, 5szz:B, 5szz:D, 5szz:C, 5t02:A, 5t02:B, 5t02:C, 5t02:D, 5t02:E, 5t02:F, 5v3a:A, 5v3a:B, 5v3a:C, 5v3a:D
6 2eis:A 121 121 0.3444 0.4298 0.4298 5.43e-26 2eis:B
7 6vfy:F 304 142 0.3113 0.1546 0.3310 3.18e-23 2v1o:A, 2v1o:D, 2v1o:B, 2v1o:C, 2v1o:E, 2v1o:F, 6vfy:D, 6vfy:E, 4zv3:A, 4zv3:B, 4zv3:C
8 6vfy:F 304 135 0.2781 0.1382 0.3111 1.08e-14 2v1o:A, 2v1o:D, 2v1o:B, 2v1o:C, 2v1o:E, 2v1o:F, 6vfy:D, 6vfy:E, 4zv3:A, 4zv3:B, 4zv3:C
9 1yli:B 148 126 0.2914 0.2973 0.3492 1.94e-19 1yli:A
10 4mob:A 319 146 0.3046 0.1442 0.3151 3.55e-18
11 4mob:A 319 130 0.2848 0.1348 0.3308 2.96e-15
12 4moc:A 273 130 0.2848 0.1575 0.3308 2.35e-15 3b7k:A, 3b7k:B, 3b7k:C
13 4moc:A 273 87 0.2119 0.1172 0.3678 5.14e-13 3b7k:A, 3b7k:B, 3b7k:C
14 3lbe:B 124 80 0.1523 0.1855 0.2875 2.50e-05 3lbe:A, 3lbe:C, 3lbe:D
15 4zrb:E 128 88 0.1457 0.1719 0.2500 0.001 4zrb:A, 4zrb:D, 4zrb:B, 4zrb:C, 4zrb:G, 4zrb:H, 4zrb:F
16 2oiw:A 133 68 0.0993 0.1128 0.2206 1.0 2oiw:C, 2oiw:B, 2oiw:D
17 5zvw:A 335 42 0.0728 0.0328 0.2619 1.2
18 6oiw:A 504 44 0.0795 0.0238 0.2727 2.1 6oi7:A, 6oi7:B, 6oi7:C, 6oi7:D, 6oi7:E, 6oi7:F, 6oiv:A, 6oiv:B, 6oiv:C, 6oiv:D, 6oiv:E, 6oiv:F, 6oiw:B, 6oiw:C, 6oiw:D, 6oiw:E, 6oiw:F, 6oiy:A, 6oiy:B, 6oiy:C, 6oiy:D, 6oiy:E, 6oiy:F, 4x9e:A, 4x9e:B
19 3es7:A 387 47 0.1126 0.0439 0.3617 2.5 3es7:B, 3es8:A, 3es8:B, 3es8:C, 3es8:D, 3es8:E, 3es8:F, 3es8:G, 3es8:H, 3fyy:A, 3fyy:B, 3hpf:A, 3hpf:B, 2oqy:A, 2oqy:B, 2oqy:C, 2oqy:D, 2oqy:E, 2oqy:F, 2oqy:G, 2oqy:H
20 2uz3:B 207 57 0.1192 0.0870 0.3158 2.7 2b8t:A, 2b8t:B, 2b8t:C, 2b8t:D, 2uz3:A, 2uz3:C, 2uz3:D
21 6i2k:B 245 47 0.0861 0.0531 0.2766 2.8 4aed:B
22 7vgh:B 1183 54 0.1060 0.0135 0.2963 4.6 7vgi:B
23 3n6r:G 646 46 0.0927 0.0217 0.3043 5.7 3n6r:I, 3n6r:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218