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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMC
LAEALLRIPDKATRDALIRDKILFVNAATWGLLFASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALAN
ARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYP
RLKSLTLLARQYDIGINIDAEESDRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIR
LVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQ
CLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKL
AQQEGQTGLPHPKIPLPRD

The query sequence (length=499) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7sqn:A 503 503 1.0000 0.9920 0.9920 0.0 3itg:B, 4jny:A, 4jnz:A, 7mwt:A, 7mwu:A, 7mwv:A
2 1tj0:A 469 499 0.9399 1.0000 0.9399 0.0 3e2q:A, 3e2r:A, 3e2s:A, 2fzm:A, 4o8a:A, 1tiw:A, 1tj1:A, 1tj2:A
3 2fzn:A 449 499 0.8998 1.0000 0.8998 0.0
4 3itg:A 399 373 0.7034 0.8797 0.9410 0.0
5 3itg:A 399 51 0.1022 0.1278 1.0000 3.27e-23
6 6x9d:A 1218 519 0.6834 0.2800 0.6570 0.0 8dkq:A, 5kf6:A, 5kf6:B, 5kf7:A, 7my9:A, 7my9:B, 7mya:A, 7mya:B, 7myb:A, 7myb:B, 7myc:A, 7myc:B, 6ufp:A, 6ufp:B, 6vz9:A, 6vz9:B, 8w0k:A, 6x99:A, 6x99:B, 6x9a:A, 6x9a:B, 6x9b:A, 6x9b:B, 6x9c:A, 6x9c:B, 6x9d:B
7 8dko:B 393 338 0.4930 0.6260 0.7278 0.0 8dko:A, 8dkp:A, 8dkp:B, 8dkq:B, 8w0k:B
8 8dko:B 393 74 0.0541 0.0687 0.3649 3.87e-04 8dko:A, 8dkp:A, 8dkp:B, 8dkq:B, 8w0k:B
9 3haz:A 983 510 0.4749 0.2411 0.4647 1.75e-141 6bsn:A, 6bsn:B, 3haz:B, 4q71:A, 4q71:B, 4q72:A, 4q72:B, 4q73:A, 4q73:B
10 5ur2:B 959 343 0.2305 0.1199 0.3353 9.20e-47 5ur2:A, 5ur2:C, 5ur2:D
11 7na0:A 981 369 0.2345 0.1193 0.3171 1.17e-37 7na0:B, 4nm9:A, 4nm9:B, 4nma:A, 4nma:B, 4nmb:A, 4nmb:B, 4nmc:B, 4nmd:A, 4nmd:B, 4nme:A, 4nme:B, 4nmf:A, 4nmf:B
12 4nmc:A 941 369 0.2244 0.1190 0.3035 1.72e-32
13 2g37:B 300 287 0.1603 0.2667 0.2787 1.01e-13 2ekg:A, 2ekg:B, 2g37:A, 5m42:A
14 4h6q:A 281 322 0.1703 0.3025 0.2640 3.70e-12 4h6q:C, 4h6r:A, 4h6r:C
15 5ux5:A 963 355 0.2064 0.1070 0.2901 2.68e-09 5ux5:B, 5ux5:C, 5ux5:D
16 6i9k:A 310 122 0.0601 0.0968 0.2459 0.51
17 8ai8:A 183 85 0.0541 0.1475 0.3176 2.1 8ai8:B, 8ai9:A, 8ai9:B, 8aib:A, 8aib:B, 7pka:A, 7pka:B
18 8k17:B 362 46 0.0341 0.0470 0.3696 4.5
19 1oao:C 729 55 0.0341 0.0233 0.3091 5.6 3git:A, 3git:B, 3git:C, 3git:D, 3git:E, 3git:F, 3i01:M, 3i01:N, 3i01:O, 3i01:P, 3i04:M, 3i04:N, 3i04:O, 3i04:P, 1mjg:M, 1mjg:N, 1mjg:O, 1mjg:P, 1oao:D, 6x5k:M, 6x5k:N, 6x5k:O, 6x5k:P, 2z8y:M, 2z8y:N, 2z8y:O, 2z8y:P
20 8dgc:A 2028 97 0.0481 0.0118 0.2474 9.0 8dgc:B, 8dgc:C, 8dgc:D
21 2bzf:A 88 57 0.0381 0.2159 0.3333 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218