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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QSVSERTRIKSDRYESGVIPYAKMGYWDAAYSVKDTDILALFRITPQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACE
RYRAKAYRVDPVPNSTDVYFAFIAYECDLFEEASLSNLTASIIGNVFGFKAISALRLEDMRIPHSYLKTFQGPATGIIVE
RERLNKYGTPLLGATVKPKLGLSGKNYGRVVYEGLKGGLDFLKDDENINSQPFMRWRERFLNCLEGINRAAAATGEVKGS
YLNITAATMEEVYKRAEYAKAIGSVVVMIDLVMGYTAIQSIAYWARENDMLLHLHRAGNSTYARQKNHGINFRVICKWMR
MSGVDHIHAGTVVGKLEGDPLMIKGFYDILRLTELEVNLPFGIFFEMDWASLRRCMPVASGGIHCGQMHQLIHYLGDDVV
LQFGGGTIGHPDGIQAGATANRVALEAMVLARNEGADYFNNQVGPQILRDAAKTCGPLQTALDLWKDISFNYTSTDTADF
A

The query sequence (length=481) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ftl:A 482 481 0.9667 0.9647 0.9667 0.0 6ftl:C, 6ftl:E, 6ftl:G, 5mz2:A, 5mz2:B, 5mz2:C, 5mz2:D, 5mz2:H, 5mz2:G, 5mz2:F, 5mz2:E, 5n9z:A, 5n9z:B, 5n9z:H, 5n9z:G, 5n9z:F, 5n9z:E, 5n9z:D, 5n9z:C, 5oya:A, 5oya:B, 5oya:C, 5oya:D, 5oya:E, 5oya:F, 5oya:G, 5oya:H, 7yk5:G, 7yk5:F, 7yk5:E, 7yk5:D, 7yk5:C, 7yk5:B, 7yk5:A, 7yk5:H
2 8bdb:A 480 480 0.8108 0.8125 0.8125 0.0 8bdb:C, 8bdb:E, 8bdb:G, 8bdb:I, 8bdb:K, 8bdb:M, 8bdb:O
3 1iwa:A 473 474 0.7838 0.7970 0.7954 0.0 1bwv:A, 1bwv:C, 1bwv:E, 1bwv:G, 4f0h:A, 1iwa:C, 1iwa:E, 1iwa:I, 1iwa:K, 1iwa:M, 1iwa:O
4 5nv3:A 467 468 0.7048 0.7259 0.7244 0.0 5nv3:E, 5nv3:B, 5nv3:F, 5nv3:C, 5nv3:G, 5nv3:D, 5nv3:H
5 1bxn:A 445 446 0.6798 0.7348 0.7332 0.0 1bxn:C, 1bxn:E, 1bxn:G
6 7qsw:C 467 467 0.6112 0.6296 0.6296 0.0 7qsw:A, 7qsw:E, 7qsw:G
7 1rbl:A 467 464 0.5613 0.5782 0.5819 0.0 1rbl:B, 1rbl:C, 1rbl:D, 1rbl:E, 1rbl:F, 1rbl:G, 1rbl:H, 1rsc:A, 1rsc:B, 1rsc:C, 1rsc:D, 1rsc:E, 1rsc:F, 1rsc:G, 1rsc:H
8 8uhi:A 465 465 0.5696 0.5892 0.5892 0.0 8uhi:B, 8uhi:C, 8uhi:D, 8uhi:E, 8uhi:F, 8uhi:G, 8uhi:H, 3zxw:A, 3zxw:C, 3zxw:E, 3zxw:G
9 6z1f:A 466 453 0.5572 0.5751 0.5916 0.0 6z1f:B, 6z1f:C, 6z1f:D, 6z1f:E, 6z1f:F, 6z1f:G, 6z1f:H
10 1gk8:A 469 464 0.5447 0.5586 0.5647 0.0 3axm:A, 3axm:B, 3axm:C, 3axm:D, 3axm:E, 3axm:F, 3axm:G, 3axm:H, 1gk8:C, 1gk8:E, 1gk8:G, 4hhh:A, 4hhh:B, 4hhh:C, 4hhh:D, 1ir2:A, 1ir2:E, 1ir2:B, 1ir2:F, 1ir2:C, 1ir2:G, 1ir2:D, 1ir2:H, 1ir2:S, 1ir2:W, 1ir2:T, 1ir2:X, 1ir2:U, 1ir2:Y, 1ir2:V, 1ir2:Z, 7jfo:O, 7jfo:E, 7jfo:C, 7jfo:I, 7jfo:G, 7jfo:M, 7jfo:A, 4mkv:A, 4mkv:B, 4mkv:C, 4mkv:D, 8q05:A, 1rlc:L, 1uw9:A, 1uw9:B, 1uw9:E, 1uw9:K, 1uw9:H, 1uw9:O, 1uw9:V, 1uw9:R, 1uwa:A, 1uwa:O, 1uwa:B, 1uwa:E, 1uwa:H, 1uwa:V, 1uwa:K, 1uwa:R, 1uzd:A, 1uzd:B, 1uzd:E, 1uzd:K, 1uzd:H, 1uzd:R, 1uzd:O, 1uzd:V, 1uzh:A, 1uzh:B, 1uzh:E, 1uzh:K, 1uzh:H, 1uzh:R, 1uzh:O, 1uzh:V, 2v63:A, 2v63:B, 2v63:C, 2v63:D, 2v63:E, 2v63:F, 2v63:G, 2v63:H, 2v67:A, 2v67:B, 2v67:C, 2v67:D, 2v67:E, 2v67:F, 2v67:G, 2v67:H, 2v68:A, 2v68:B, 2v68:C, 2v68:D, 2v68:E, 2v68:F, 2v68:G, 2v68:H, 2v69:A, 2v69:B, 2v69:C, 2v69:D, 2v69:E, 2v69:F, 2v69:G, 2v69:H, 2v6a:A, 2v6a:B, 2v6a:C, 2v6a:D, 2v6a:E, 2v6a:F, 2v6a:G, 2v6a:H, 2vdh:A, 2vdh:B, 2vdh:C, 2vdh:D, 2vdh:E, 2vdh:F, 2vdh:G, 2vdh:H, 2vdi:A, 2vdi:B, 2vdi:C, 2vdi:D, 2vdi:E, 2vdi:F, 2vdi:G, 2vdi:H
11 1rbo:L 467 465 0.5426 0.5589 0.5613 7.28e-180 1aa1:L, 1aa1:B, 1aa1:E, 1aa1:H, 1aus:L, 1aus:M, 1aus:N, 1aus:O, 3axk:A, 3axk:B, 1ej7:L, 1ir1:A, 1ir1:B, 1ir1:C, 1ir1:D, 5iu0:A, 5iu0:B, 8qj0:L, 8qj0:M, 8qj0:N, 8qj0:O, 1rbo:B, 1rbo:E, 1rbo:H, 1rco:L, 1rco:B, 1rco:E, 1rco:H, 1rco:K, 1rco:O, 1rco:R, 1rco:V, 1rcx:L, 1rcx:B, 1rcx:E, 1rcx:H, 1rcx:K, 1rcx:O, 1rcx:R, 1rcx:V, 4rub:A, 4rub:D, 4rub:B, 4rub:C, 8ruc:A, 8ruc:C, 8ruc:E, 8ruc:G, 1rxo:L, 1rxo:B, 1rxo:E, 1rxo:H, 1upm:B, 1upm:L, 1upm:E, 1upm:H, 1upm:K, 1upm:O, 1upm:R, 1upm:V, 1upp:A, 1upp:C, 1upp:E, 1upp:G, 1wdd:A, 1wdd:E, 5wsk:A, 5wsk:B, 5wsk:C, 5wsk:D
12 7qt1:C 452 459 0.5468 0.5819 0.5730 1.31e-177 7qsv:A, 7qsv:B, 7qsv:C, 7qsv:D, 7qsv:E, 7qsv:F, 7qsv:G, 7qsv:H, 7qsx:A, 7qsx:F, 7qsx:B, 7qsx:E, 7qsx:C, 7qsx:D, 7qsx:G, 7qsx:H, 7qsy:A, 7qsy:C, 7qsy:E, 7qsy:G, 7qsz:A, 7qsz:B, 7qsz:C, 7qsz:D, 7qt1:A, 7qt1:E, 7qt1:G, 7qvi:A, 7qvi:B, 7qvi:C, 7qvi:D, 7qvi:E, 7qvi:F, 7qvi:G, 7qvi:H, 7qvi:I, 7qvi:J, 7qvi:K, 7qvi:L, 7qvi:M, 7qvi:N, 7qvi:O, 7qvi:P
13 7smk:A 455 456 0.5364 0.5670 0.5658 4.24e-169 7snv:A
14 8cmy:C 445 443 0.4990 0.5393 0.5418 1.20e-154 8cmy:M, 8cmy:G, 8cmy:I, 8cmy:K, 8cmy:O, 7yyo:A, 7yyo:C, 7yyo:E, 7yyo:G, 7yyo:I, 7yyo:K, 7yyo:M, 7yyo:O
15 8u66:A 448 458 0.4865 0.5223 0.5109 3.28e-146 8u66:B, 8u66:C, 8u66:D, 8u66:E, 8u66:F, 8u66:G, 8u66:H
16 6ura:A 441 460 0.4802 0.5238 0.5022 1.14e-144 6ura:B, 6ura:C, 6ura:D
17 6hun:A 428 410 0.3368 0.3785 0.3951 2.45e-96
18 8dht:A 440 457 0.3493 0.3818 0.3676 1.27e-85 8dht:B, 8dht:C, 8dht:D
19 3kdo:C 440 455 0.3514 0.3841 0.3714 1.05e-82 3a12:A, 3a12:B, 3a12:C, 3a12:D, 3a12:E, 3a12:F, 3a12:G, 3a12:H, 3a12:I, 3a12:J, 3a13:A, 3a13:B, 3a13:C, 3a13:D, 3a13:E, 3a13:F, 3a13:G, 3a13:H, 3a13:I, 3a13:J, 3kdn:A, 3kdn:H, 3kdn:B, 3kdn:G, 3kdn:C, 3kdn:F, 3kdn:D, 3kdn:J, 3kdn:E, 3kdn:I, 3kdo:A, 3kdo:H, 3kdo:B, 3kdo:G, 3kdo:F, 3kdo:D, 3kdo:J, 3kdo:E, 3kdo:I, 3wqp:A, 3wqp:B, 3wqp:C, 3wqp:D, 3wqp:E, 3wqp:F, 3wqp:G, 3wqp:H, 3wqp:I, 3wqp:J
20 5mac:A 473 426 0.2765 0.2812 0.3122 1.25e-48 5mac:B, 5mac:D, 5mac:C, 5mac:E
21 9rub:A 459 404 0.2620 0.2745 0.3119 2.78e-40 2rus:A, 9rub:B
22 7t1j:B 457 424 0.2827 0.2976 0.3208 3.56e-39 7t1j:A, 7t1j:C, 7t1j:D, 7t1j:E, 7t1j:F, 7t1j:G, 7t1j:H, 7t1j:I, 7t1j:J, 7t1j:K, 7t1j:L
23 5hqm:A 459 411 0.2620 0.2745 0.3066 8.53e-35 5han:A, 5han:B, 5han:C, 5han:D, 5han:E, 5han:F, 5han:G, 5han:H, 5han:I, 5han:J, 5han:K, 5han:L, 5hao:A, 5hao:B, 5hao:C, 5hao:D, 5hao:E, 5hao:F, 5hat:A, 5hat:B, 5hat:C, 5hat:D, 5hat:E, 5hat:F, 5hat:G, 5hat:H, 5hat:I, 5hat:J, 5hat:K, 5hat:L, 5hjx:A, 5hjx:B, 5hjx:C, 5hjx:D, 5hjx:E, 5hjx:F, 5hjy:A, 5hjy:B, 5hjy:C, 5hjy:D, 5hjy:E, 5hjy:F, 5hk4:A, 5hk4:B, 5hk4:C, 5hk4:D, 5hk4:E, 5hk4:F, 5hql:A, 5hql:B, 5hql:C, 5hql:D, 5hql:E, 5hql:F, 5hqm:B, 5koz:A, 5koz:B, 5koz:C, 5koz:D, 5koz:E, 5koz:F, 5koz:G, 5koz:H, 5koz:I, 5koz:J, 5koz:K, 5koz:L, 4lf1:A, 4lf1:B, 4lf1:C, 4lf1:D, 4lf1:E, 4lf1:F, 4lf2:A, 4lf2:C, 4lf2:D
24 5c2g:A 461 408 0.2620 0.2733 0.3088 1.49e-33 5c2c:A, 5c2c:B, 5c2c:C, 5c2g:C, 5c2g:B, 5c2g:F, 5c2g:D, 5c2g:E
25 2oek:A 412 339 0.1788 0.2087 0.2537 6.06e-20 2oej:B, 2oek:B, 2oel:A, 2oel:B, 2oem:A, 2oem:B
26 4nas:B 399 346 0.1767 0.2130 0.2457 5.98e-15 4nas:A, 4nas:C, 4nas:D
27 6il9:A 490 136 0.0686 0.0673 0.2426 0.12 6ila:A, 6ilb:A, 6ilb:D
28 8eik:C 407 250 0.0998 0.1179 0.1920 2.6
29 7pub:CK 298 41 0.0291 0.0470 0.3415 2.6 6hiv:CK, 6hiw:CK, 6hiy:CK, 6hiz:CK, 6sg9:CK, 6sga:CK
30 6sgb:CK 211 41 0.0291 0.0664 0.3415 2.8
31 5aor:A 1009 53 0.0353 0.0168 0.3208 3.2 5aor:B, 8b9i:A, 8b9j:A
32 8pjb:A 962 53 0.0353 0.0177 0.3208 3.3 8b9g:A, 8b9k:A, 8pjj:A
33 2qf7:B 1017 62 0.0353 0.0167 0.2742 3.8 3tw7:A, 3tw7:B
34 8eik:E 378 255 0.0998 0.1270 0.1882 4.1
35 3tw6:B 1129 63 0.0333 0.0142 0.2540 5.7 4jx4:A, 4jx4:B, 4jx4:C, 4jx4:D, 4jx5:A, 4jx5:B, 4jx5:C, 4jx5:D, 4jx6:A, 4jx6:B, 4jx6:C, 4jx6:D, 4loc:A, 4loc:B, 4loc:C, 4loc:D, 4m6v:A, 4m6v:B, 4m6v:C, 4m6v:D, 4mfd:A, 4mfd:B, 4mfd:C, 4mfd:D, 4mfe:A, 4mfe:B, 4mfe:C, 4mfe:D, 4mim:A, 4mim:B, 4mim:C, 4mim:D, 3tw6:C, 3tw6:D
36 2qf7:A 1076 63 0.0333 0.0149 0.2540 5.9 3tw6:A
37 1gph:1 465 124 0.0686 0.0710 0.2661 8.2 1ao0:A, 1ao0:B, 1ao0:C, 1ao0:D, 1gph:2, 1gph:3, 1gph:4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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