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BioLiP
>protein
QSRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1am9:C 82 76 1.0000 0.9268 1.0000 3.46e-50 1am9:D, 1am9:A, 1am9:B
2 7f2f:B 94 67 0.4079 0.3298 0.4627 1.64e-10 7f2f:A
3 8ia3:E 111 64 0.2895 0.1982 0.3438 3.68e-08 8ia3:A, 8ia3:B, 8ia3:F
4 7d8t:A 199 63 0.3289 0.1256 0.3968 3.97e-08 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
5 1an4:A 65 61 0.2763 0.3231 0.3443 2.09e-06 1an4:B
6 1hlo:A 80 66 0.2763 0.2625 0.3182 3.66e-06
7 8hov:A 87 83 0.3947 0.3448 0.3614 3.90e-06 8hov:C, 8hov:B, 8hov:D, 8hov:E, 8hov:F
8 5eyo:C 88 63 0.2632 0.2273 0.3175 9.31e-06 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
9 8osk:M 316 60 0.2763 0.0665 0.3500 1.21e-05 4h10:B, 8osl:M, 8osl:O
10 7f09:C 67 44 0.2368 0.2687 0.4091 8.12e-04
11 8osl:N 290 69 0.3816 0.1000 0.4203 0.002 4h10:A, 8osk:N, 8osl:P
12 5i50:B 96 59 0.2632 0.2083 0.3390 0.010 5i50:A, 1nkp:A, 1nkp:D
13 7xi4:A 283 58 0.2500 0.0671 0.3276 0.013 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
14 4zpr:A 235 59 0.2763 0.0894 0.3559 0.015
15 7xi3:A 287 64 0.2500 0.0662 0.2969 0.020
16 8ow1:B 116 60 0.2368 0.1552 0.3000 0.021 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
17 2ypa:A 67 52 0.2237 0.2537 0.3269 0.036 2ypb:A
18 5nj8:D 134 56 0.2368 0.1343 0.3214 0.047
19 2fko:A 173 52 0.1974 0.0867 0.2885 2.2 1v3w:A, 1v67:A
20 8qzs:r 114 66 0.2632 0.1754 0.3030 2.6 7abf:N, 7abg:N, 7abi:N, 8h6k:4N, 5o9z:N, 8q7n:r, 8qpe:r
21 3ajx:A 207 42 0.1842 0.0676 0.3333 3.4 3ajx:B, 3ajx:C, 3ajx:D
22 5yke:B 845 16 0.1316 0.0118 0.6250 3.4 6jb3:B, 5yke:D, 5yke:F, 5yke:H
23 5ykf:B 1309 16 0.1316 0.0076 0.6250 3.4 5ykf:D, 5ykf:F, 5ykf:H, 5ykg:B, 5ykg:D, 5ykg:F, 5ykg:H, 5yw8:B, 5yw8:D, 5yw8:F, 5yw8:H, 5yw9:B, 5yw9:D, 5yw9:F, 5yw9:H, 5ywa:B, 5ywa:D, 5ywa:F, 5ywa:H
24 6baa:E 1317 16 0.1316 0.0076 0.6250 3.4 6baa:F, 6baa:G, 6baa:H
25 6jb1:B 1366 16 0.1316 0.0073 0.6250 3.4 6jb1:D, 6jb1:F, 6jb1:H, 7wit:A, 5yw7:B, 5ywd:B
26 7u1s:E 1439 16 0.1316 0.0069 0.6250 3.4 6pza:C, 6pzi:G, 7tys:E, 7tyt:E, 7u1e:E, 7u1q:E, 7u24:E, 7u2x:E, 7u6y:E, 7u7m:E, 7uaa:E
27 4nv1:E 242 26 0.1447 0.0455 0.4231 4.3 4nv1:C, 4nv1:D, 4nv1:F, 4nv1:B, 4nv1:A, 4nv1:G, 4nv1:H
28 7aju:CL 808 31 0.1579 0.0149 0.3871 5.4 6zqd:CL, 6zqe:CL, 6zqf:CL, 6zqg:CL
29 7wtl:CL 610 31 0.1579 0.0197 0.3871 6.1 5wyj:B1, 5wyk:B1
30 1nlw:A 79 57 0.2368 0.2278 0.3158 6.6 1nlw:D
31 5nj8:A 176 56 0.2368 0.1023 0.3214 7.0 5nj8:C, 5v0l:B
32 5k0a:D 322 27 0.1447 0.0342 0.4074 9.2 5jri:A, 5jri:B, 5k0a:A, 5k0a:B, 5k0a:C
33 3lnl:B 349 42 0.1842 0.0401 0.3333 9.7 2nyd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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