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BioLiP
>protein
QSLEPVAFHDSDECHVCGMIITDFPGPKGQAVEKRGVKKFCSTAEMLGWWLQPENRLLDAKLYVHDMGRSVWEKPDDGHL
IDATSAYYVVGTSLKGAMGASLASFAEEQDAKALAGMHGGRVLRFEEIDQALLQEAASMQHGG

The query sequence (length=143) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7osj:H 151 143 1.0000 0.9470 1.0000 1.16e-105 7osf:H, 7osg:H, 7osh:H, 7osi:H, 7znq:L
2 7og7:A 134 127 0.4196 0.4478 0.4724 2.05e-39
3 6c94:A 482 69 0.1399 0.0415 0.2899 1.1 6c93:A, 5t6q:A
4 4kdr:A 208 19 0.0699 0.0481 0.5263 2.3 5dpm:A
5 1unl:A 292 28 0.0769 0.0377 0.3929 3.0 4au8:A, 4au8:B, 3o0g:B, 1ung:A, 1ung:B, 1unh:A, 1unh:B, 7vdp:A, 7vdp:B, 7vdq:A, 7vdq:B, 7vdr:A, 7vdr:B, 7vds:A
6 5lcv:B 405 80 0.1678 0.0593 0.3000 3.1 7a3n:A, 5lbv:B
7 6e1j:A 409 58 0.1049 0.0367 0.2586 8.5 6e1j:B
8 1br2:A 673 60 0.1329 0.0282 0.3167 10.0 1br2:B, 1br2:C, 1br2:D, 1br2:E, 1br2:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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