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BioLiP
>protein
QSDFSPYIEIDLPSESRIQSLHKSGLAAQEWVACEKVHGTNFGIYLINQGDHEVVRFAKRSGIMDPNENFFGYHILIDEF
TAQIRILNDLLKQKYGLSRVGRLVLNGELFGAKYKHPLVPKSEKWCTLPNGKKFPIAGVQIQREPFPQYSPELHFFAFDI
KYSVSGAEEDFVLLGYDEFVEFSSKVPNLLYARALVRGTLDECLAFDVENFMTPLPALLGLGNYPLEGNLAEGVVIRHVR
RGDPAVEKHNVSTIIKLRCSSFMEL

The query sequence (length=265) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1xdn:A 265 265 1.0000 1.0000 1.0000 0.0
2 2hvr:A 319 75 0.1094 0.0909 0.3867 2.64e-11 2hvq:A, 2hvr:B, 2hvs:A, 2hvs:B, 1s68:A
3 5fjq:A 180 56 0.0679 0.1000 0.3214 2.7 5fjq:B, 5fjq:C
4 8tlq:A 1283 46 0.0604 0.0125 0.3478 3.8 8tlt:A, 6v93:A
5 7s0t:A 1231 46 0.0604 0.0130 0.3478 3.8
6 7lxd:A 1190 46 0.0604 0.0134 0.3478 3.9 6v8p:A
7 7m8i:A 572 96 0.0792 0.0367 0.2188 4.1 1ayf:A, 1ayf:B, 2bt6:A, 2bt6:B, 1cje:A, 1cje:B, 1cje:C, 1cje:D, 4dvq:A, 4dvq:B, 4dvq:C, 4dvq:D, 4dvq:E, 4dvq:F, 4dvq:G, 4dvq:H, 4dvq:I, 4dvq:J, 4dvq:K, 4dvq:L, 1e6e:D, 7e7f:A, 4fdh:A, 4fdh:B, 4fdh:C, 4fdh:D, 4fdh:E, 4fdh:F, 4fdh:G, 4fdh:H, 4fdh:I, 4fdh:J, 4fdh:K, 4fdh:L, 2jqr:B, 1l6v:A, 6m7x:A, 6m7x:B, 7m8i:B, 7m8i:C, 7m8v:A, 7m8v:B, 7m8v:C, 7m8v:D, 7m8v:E, 7m8v:F, 7m8v:G, 7m8v:H, 7m8v:I, 7m8v:J, 7m8v:K, 7m8v:L, 3n9y:C, 3n9y:D, 6xz8:A, 6xz8:B, 6xz8:C, 6xz9:A, 6xz9:B, 6xz9:C, 4zgx:A, 4zgx:B, 4zgx:C, 4zgx:D, 4zgx:E, 4zgx:F, 4zgx:G, 4zgx:H, 4zgx:I, 4zgx:J, 4zgx:K, 4zgx:L
8 7aqw:n 109 51 0.0566 0.1376 0.2941 5.1 7ar7:n, 7ar8:n, 7arb:n, 8beh:n, 8bpx:n, 8bq5:n, 8bq6:n
9 8byk:A 437 46 0.0566 0.0343 0.3261 6.8
10 1kvd:B 77 63 0.0679 0.2338 0.2857 6.8
11 8q87:A 857 39 0.0528 0.0163 0.3590 9.0 6d9j:9, 6gz3:Ct, 6gz4:Ct, 6gz5:Ct, 3j7p:4, 7ls1:m, 7ls2:m, 6mtd:v, 6mte:v, 7oyc:v2, 4v6x:Az, 8xsx:CB, 6z6m:CB, 6z6n:CB
12 2xpo:A 139 37 0.0377 0.0719 0.2703 9.3 2xpn:A, 2xpo:C, 2xpp:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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