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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QSCLPNWIMHGKSCYLFSFSGNSWYGSKRHCSQLGAHLLKIDNSKEFEFIESQTSSHRINAFWIGLSRNQSEGPWFWEDG
SAFFPNSFQVRNAVPQESLLHNCVWIHGSEVYNQICNTSSYSICEKEL

The query sequence (length=128) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2bpe:A 128 128 1.0000 1.0000 1.0000 4.00e-93 2bpe:B, 2bph:A, 2bph:B, 2cl8:A, 2cl8:B
2 6tl9:F 130 125 0.4062 0.4000 0.4160 5.16e-30 6tl9:B, 6tl9:C, 6tl9:G
3 3wsr:A 120 125 0.3438 0.3667 0.3520 1.19e-20 3wsr:B
4 3j82:A 131 125 0.3516 0.3435 0.3600 1.26e-19
5 3vpp:B 122 127 0.3203 0.3361 0.3228 2.96e-16 3vpp:A
6 1sl6:A 168 127 0.3516 0.2679 0.3543 1.37e-14 1k9j:A, 1sl6:B, 1sl6:C, 1sl6:D, 1sl6:E, 1sl6:F, 1xph:A
7 3t3a:A 122 126 0.2812 0.2951 0.2857 3.32e-14 3t3a:B
8 6ghv:D 133 126 0.3281 0.3158 0.3333 5.50e-14 6ghv:A, 6ghv:B, 6ghv:C, 6ghv:E, 6ghv:F, 2it5:A, 2it6:A, 1k9i:A, 1k9i:C, 1k9i:D, 1k9i:E, 1k9i:H, 1k9i:B, 1k9i:F, 1k9i:G, 1k9i:I, 1k9i:J, 7nl6:A, 7nl7:A, 1sl4:A, 1sl5:A, 2xr5:A, 2xr6:A
9 8h4v:A 148 84 0.2656 0.2297 0.4048 6.64e-14 8h4v:B, 8hb5:A, 5kth:A, 5kti:A, 4kzv:A, 4kzv:B, 4kzw:A, 4kzw:B, 4zrv:A, 4zrv:C, 4zrv:B, 4zrw:A
10 6py1:A 130 134 0.3203 0.3154 0.3060 5.12e-13 6puv:A, 6w12:A, 6xiy:A
11 3wh2:A 132 81 0.2578 0.2500 0.4074 5.41e-13 3wh3:A
12 8urf:A 128 84 0.2500 0.2500 0.3810 1.05e-11
13 5jq1:A 130 135 0.3047 0.3000 0.2889 2.09e-11 1dv8:A, 5jpv:A, 5jpv:B, 5jq1:B, 8ts0:A, 6yau:A
14 8ea6:B 124 88 0.2266 0.2339 0.3295 7.92e-11 8ea5:A, 8ea5:B, 8ea6:A, 8ea7:A, 8ea7:B, 8ea8:B, 8ea8:A, 8ea9:B, 8ea9:A, 8eaa:B, 8eaa:A, 8eab:A, 8eab:B, 8se5:B, 8se5:A, 8se6:A, 8se6:B
15 3whd:C 148 131 0.3203 0.2770 0.3130 7.96e-11 3whd:A
16 3cdg:J 123 132 0.2969 0.3089 0.2879 1.10e-10 3cdg:E, 3cii:G, 3cii:I
17 5e4k:A 424 134 0.3359 0.1014 0.3209 4.72e-10
18 5e4k:A 424 72 0.1953 0.0590 0.3472 1.97e-04
19 7odu:A 129 82 0.2188 0.2171 0.3415 5.19e-10
20 6a7s:B 138 87 0.2500 0.2319 0.3678 5.70e-10 6a7t:B, 6m5m:B
21 4c9f:D 134 126 0.2812 0.2687 0.2857 1.73e-09 4c9f:A, 4c9f:B, 4c9f:C, 4caj:A, 4caj:B, 4caj:C, 4caj:D, 3zhg:A, 3zhg:B, 3zhg:C, 3zhg:D
22 6jjj:A 151 134 0.3125 0.2649 0.2985 4.95e-09 6jjj:B, 6jjj:C, 6jjj:D, 6jjj:E, 6jjj:F
23 5b1w:A 130 82 0.2031 0.2000 0.3171 5.28e-09 5b1w:B, 5b1w:C, 5b1w:D, 5b1x:A, 5b1x:B, 5b1x:C, 5b1x:D
24 6a7t:A 137 133 0.2812 0.2628 0.2707 4.46e-08 6m5m:A
25 6jk4:A 126 102 0.2109 0.2143 0.2647 6.37e-08
26 2py2:A 127 129 0.2812 0.2835 0.2791 1.01e-07 2py2:B, 2py2:C, 2py2:D, 2py2:E, 2py2:F
27 2ox8:A 129 81 0.1953 0.1938 0.3086 1.50e-07 2ox8:B, 2ox8:C, 2ox8:D
28 6lfj:A 133 83 0.2266 0.2180 0.3494 2.36e-07 6kzr:A, 6kzr:B, 6lfj:B, 6lkr:A, 6lkr:B
29 2ox9:C 131 79 0.1953 0.1908 0.3165 2.43e-07 2ox9:A, 2ox9:B, 2ox9:D
30 5vyb:A 143 84 0.2031 0.1818 0.3095 4.20e-07
31 4zes:A 147 86 0.2188 0.1905 0.3256 4.93e-07 4zes:B, 4zet:A, 4zet:B
32 8umo:K 113 84 0.1953 0.2212 0.2976 6.26e-07
33 5k8y:A 136 77 0.1797 0.1691 0.2987 9.74e-07 5k8y:B, 5m62:A, 5m62:B
34 1fvu:B 121 85 0.2109 0.2231 0.3176 1.29e-06 1fvu:D
35 5e4l:A 428 114 0.2969 0.0888 0.3333 1.71e-06
36 5e4l:A 428 72 0.1953 0.0584 0.3472 2.28e-04
37 3kqg:A 169 69 0.1797 0.1361 0.3333 2.28e-06 4ak8:A, 4ak8:B, 4ak8:C, 4ak8:D, 3c22:A, 3c22:B, 3c22:C, 3c22:D, 5g6u:A, 5g6u:B, 5g6u:D, 5g6u:C, 3kqg:B, 3kqg:C, 3kqg:D, 3kqg:E, 3kqg:F, 4n32:A, 4n32:B, 4n32:C, 4n32:D, 4n33:A, 4n33:B, 4n33:C, 4n33:D, 4n34:A, 4n34:B, 4n34:C, 4n34:D, 4n35:A, 4n35:B, 4n35:C, 4n35:D, 4n36:A, 4n36:B, 4n36:C, 4n36:D, 4n37:A, 4n37:B, 4n37:C, 4n37:D, 4n38:A, 4n38:B, 4n38:C, 4n38:D, 3p5d:A, 3p5d:B, 3p5d:C, 3p5d:D, 3p5e:A, 3p5e:B, 3p5e:C, 3p5e:D, 3p5f:B, 3p5f:C, 3p5f:A, 3p5f:D, 3p5g:A, 3p5g:B, 3p5g:C, 3p5g:D, 3p5h:B, 3p5h:D, 3p5h:A, 3p5h:C, 3p5i:A, 3p5i:B, 3p5i:C, 3p5i:D, 3p7f:A, 3p7f:B, 3p7f:C, 3p7f:D, 3p7g:A, 3p7g:B, 3p7g:C, 3p7g:D, 3p7h:A, 3p7h:B, 3p7h:C, 3p7h:D, 7ytq:A, 7ytq:B, 7ytq:C, 7ytq:D
38 4gko:L 136 131 0.2656 0.2500 0.2595 2.68e-06 4g9a:A, 4g9a:B, 4g9a:C, 4g9a:D, 4gko:G, 4gko:H, 4gko:I, 4gko:J, 4gko:K, 2h2t:B
39 6pwr:A 129 114 0.2422 0.2403 0.2719 7.55e-06 6pws:A, 6pwt:A
40 1tdq:B 126 83 0.1719 0.1746 0.2651 2.47e-05
41 5e4l:B 386 73 0.1953 0.0648 0.3425 2.05e-04
42 3vyk:A 128 83 0.2031 0.2031 0.3133 3.05e-04
43 1egg:B 144 63 0.1562 0.1389 0.3175 0.003 1egg:A, 1egi:A, 1egi:B, 7jub:A, 7juc:A, 7jud:A, 7jud:B, 7jue:A, 7juf:A, 7juf:B, 7jug:A, 7juh:A, 7l61:A, 7l62:A, 7l63:A, 7l64:A, 7l65:A, 7l66:A, 7l67:A, 7l68:A, 7l68:B
44 1bj3:B 123 85 0.1875 0.1951 0.2824 0.004 1ixx:B, 1ixx:D, 1ixx:F, 1j34:B, 1j35:B, 1x2t:B, 1x2t:D
45 1ixx:A 129 70 0.1641 0.1628 0.3000 0.005 1ixx:C, 1ixx:E
46 5xts:A 460 66 0.1719 0.0478 0.3333 0.007 5xtw:A, 5xtw:C, 5xtw:D, 5xtw:E, 5xtw:F, 5xtw:H
47 5xts:A 460 82 0.1562 0.0435 0.2439 0.033 5xtw:A, 5xtw:C, 5xtw:D, 5xtw:E, 5xtw:F, 5xtw:H
48 1iod:B 123 85 0.1719 0.1789 0.2588 0.017 1wt9:B, 1y17:B
49 1iod:A 129 114 0.2344 0.2326 0.2632 0.030 1wt9:A, 1y17:A
50 1ukm:B 124 92 0.1797 0.1855 0.2500 0.043
51 1g1q:A 160 62 0.1172 0.0938 0.2419 0.049 1g1q:B, 1g1q:C, 1g1q:D, 1g1r:A, 1g1r:B, 1g1r:D, 1g1r:C, 1g1s:B, 1g1s:A
52 4wqq:A 141 88 0.1562 0.1418 0.2273 0.099 1wmy:A, 1wmy:B, 1wmz:A, 1wmz:B, 1wmz:C, 1wmz:D, 4wqq:B, 4wqq:C, 4wqq:D
53 1qdd:A 144 71 0.1406 0.1250 0.2535 0.11
54 2vuv:A 129 107 0.2109 0.2093 0.2523 0.12 2vuz:A
55 3cfw:A 156 63 0.1406 0.1154 0.2857 0.20 5vc1:A
56 4c16:A 280 54 0.1172 0.0536 0.2778 0.53 4c16:B, 4csy:A, 4csy:B, 1esl:A, 6eyi:A, 6eyj:A, 6eyj:B, 6eyk:A, 1g1t:A
57 6n9q:P 277 47 0.1250 0.0578 0.3404 0.73 6n9i:A, 6n9i:B, 6n9i:C, 6n9q:D, 6n9r:A, 6n9r:P, 6n9r:X
58 1htn:A 156 112 0.1797 0.1474 0.2054 2.0 1tn3:A
59 5f2q:B 135 85 0.1719 0.1630 0.2588 2.4 5f2q:A, 5f2q:C, 5f2q:D, 5f2q:E, 5f2q:F, 5f2q:G, 5f2q:H, 5f2q:I, 5f2q:J, 1jzn:A, 1jzn:B, 1jzn:C, 1jzn:D, 1jzn:E, 1muq:B, 1muq:A, 1muq:C, 1muq:D, 1muq:E
60 6cgy:A 276 47 0.1172 0.0543 0.3191 4.3 6cgy:H, 6cgy:L, 6cgz:A, 6cgz:B, 6cgz:C, 6ch0:C, 6ch0:F, 6ch0:I
61 6l8h:A 466 22 0.0625 0.0172 0.3636 4.4 6l8h:B, 6l8h:C, 6l8h:D
62 6coy:A 465 27 0.0938 0.0258 0.4444 8.8 6coy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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