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BioLiP
>protein
QRWLPLEANPEVTNQFLKQLGLHPNWQFVDVYGMDPELLSMVPRPVCAVLLLFPITEKYEVFRTEEEEKIKSQGQDVTSS
VYFMKQTISNACGTIGLIHAIANNKDKMHFESGSTLKKFLEESVSMSPEERARYLENYDAIRVTHETSAHEGQTEAPSID
EKVDLHFIALVHVDGHLYELDGRKPFPINHGETSDETLLEDAIEVCKKFMERDPDELRFNAIALSAA

The query sequence (length=227) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1xd3:A 229 227 1.0000 0.9913 1.0000 5.84e-173 1xd3:C
2 7yv4:A 202 225 0.8899 1.0000 0.8978 2.14e-146
3 4dm9:A 223 223 0.5419 0.5516 0.5516 8.86e-91 4dm9:B, 8ede:A, 8ede:B, 3ifw:A, 3kvf:A, 3kw5:A, 8pw1:A, 8pw1:B, 8pw1:C, 8pw1:D, 8pw1:E, 8pw1:F, 8pw1:G, 8pw1:H, 8pw1:I, 8pw1:J, 7zm0:A, 7zm0:B, 7zm0:C, 7zm0:D, 7zm0:H, 7zm0:E, 7zm0:F, 7zm0:G, 7zm0:I, 7zm0:J
4 1cmx:C 210 187 0.2731 0.2952 0.3316 4.84e-27
5 3rii:A 212 225 0.2819 0.3019 0.2844 6.06e-19 3tb3:B
6 4i6n:A 219 224 0.2687 0.2785 0.2723 3.45e-15 4i6n:C
7 8svf:K 278 231 0.2731 0.2230 0.2684 6.80e-14
8 8h1t:L 301 233 0.2687 0.2027 0.2618 1.50e-12
9 4ig7:A 231 150 0.2159 0.2121 0.3267 5.08e-12
10 207l:A 130 53 0.0661 0.1154 0.2830 0.16 208l:A, 1d6q:A, 1hnl:A, 1i22:A, 1i22:B, 1i22:C, 1i22:D, 3lhm:A, 5lsh:A, 1re2:A, 1rem:A, 1rez:A, 1ubz:A
11 8fmw:AW 101 53 0.0705 0.1584 0.3019 0.30 8fn2:W
12 6vjr:A 502 80 0.0969 0.0438 0.2750 0.56 6vjr:C, 6vjr:B, 6vjr:D
13 8iuf:5B 157 66 0.0749 0.1083 0.2576 1.3 8iuj:5B, 8iuj:5b
14 7fc0:E 264 57 0.0661 0.0568 0.2632 1.4 7fc0:B
15 8t4e:B 551 101 0.1189 0.0490 0.2673 2.2 8t4f:B, 8t4g:B, 8t4h:B, 8t4i:B, 8t4j:B
16 8t0z:A 409 70 0.0969 0.0538 0.3143 3.3 8t0z:B, 8t0z:C, 8t0z:D, 8t0z:E, 8t0z:G, 8t0z:I, 8t0z:K, 8t0z:F, 8t0z:H, 8t0z:J, 8t0z:L
17 3oid:B 251 79 0.1145 0.1036 0.3291 3.5 3oid:A, 3oid:C, 3oid:D
18 2wqd:A 570 79 0.0881 0.0351 0.2532 4.6
19 4maf:B 404 66 0.0749 0.0421 0.2576 5.2 4maf:A, 4maf:C, 4maf:D, 4maf:E, 4maf:F, 4maf:G, 4maf:H
20 3ck9:B 515 70 0.0837 0.0369 0.2714 5.6 3ck7:A, 3ck7:B, 3ck7:C, 3ck7:D, 3ck8:A, 3ck8:B, 3ck9:A, 3ckb:A, 3ckb:B, 3ckc:A, 3ckc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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