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BioLiP
>protein
QRVRIMGGTNRGRAEVYYNNEWGTICDDDWDNNDATVFCRMLGYSRGRALSSYGGGSGNIWLDNVNCRGTENSLWDCSKN
SWGNHNCVHNEDAGVECS

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2oy3:A 98 98 1.0000 1.0000 1.0000 6.03e-68
2 8j8t:A 114 101 0.5204 0.4474 0.5050 2.41e-27 8j8t:B, 6sa5:A, 6san:A, 6san:B
3 6j02:A 103 103 0.4694 0.4466 0.4466 4.45e-27 6j02:B
4 6sa4:A 109 103 0.5408 0.4862 0.5146 7.96e-27
5 7dpx:A 103 102 0.4490 0.4272 0.4314 3.01e-26
6 7bzz:A 109 94 0.4592 0.4128 0.4787 3.65e-24 7bzz:D
7 7c00:A 108 93 0.4490 0.4074 0.4731 2.08e-22
8 5ze3:B 443 100 0.4592 0.1016 0.4500 8.83e-19 5ze3:A
9 5ze3:B 443 91 0.2959 0.0655 0.3187 1.56e-04 5ze3:A
10 2xrc:C 454 54 0.1837 0.0396 0.3333 0.045
11 2xrc:B 485 58 0.1837 0.0371 0.3103 0.17 5o32:D, 5o32:H, 2xrc:A, 2xrc:D
12 2zoc:A 319 71 0.1939 0.0596 0.2676 0.34 1ann:A, 1i4a:A, 2zoc:B
13 8s0l:A 369 42 0.1327 0.0352 0.3095 0.53 8hd8:A, 8hd8:C, 8hd8:B, 8hd8:D, 7meq:A, 8v04:B, 8v1f:C, 8v1f:B, 8v1f:D, 7xyd:A, 7xyd:C, 7xyd:B, 7xyd:D, 7y0e:A, 7y0e:C, 7y0e:B, 7y0e:D, 7y0f:A, 7y0f:C, 7y0f:B, 7y0f:D
14 1pyy:A 607 45 0.1633 0.0264 0.3556 1.7
15 5oj0:A 658 45 0.1633 0.0243 0.3556 1.7 1qmf:A
16 5oj1:A 675 45 0.1633 0.0237 0.3556 1.7 5oiz:A, 2z2m:B, 2z2m:E, 2zc3:B, 2zc3:E, 2zc4:B, 2zc4:E
17 6yu8:A 268 35 0.1429 0.0522 0.4000 2.5
18 8psn:A 417 78 0.2347 0.0552 0.2949 2.6 8pso:A, 8psq:A, 8pss:A, 8psu:A, 8psx:A, 8psz:A, 8pt2:A, 8pt6:A, 8pt7:A, 8pth:A, 8ptj:A, 8qz8:A
19 8br8:LU 157 80 0.2041 0.1274 0.2500 2.8 8brm:LU, 8bsi:LU, 8bsj:LU, 8btd:LU, 8btr:LU, 8fru:T, 7pwg:T, 7pwo:T2
20 4tvm:A 380 33 0.1122 0.0289 0.3333 4.5
21 8uc0:A 422 31 0.1122 0.0261 0.3548 5.7 8qct:A, 8r8t:A, 8ubw:A, 8ubx:A, 8uby:A, 8ubz:A
22 7oa6:B 152 24 0.0918 0.0592 0.3750 7.4 7oa6:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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