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BioLiP
>protein
QRVGARLAARAQIRDIRLLRTQAAVHRAPKPAQGLTYDLEFEPAVDADPATISAFVVRISCHLRIQNQATQDVATADFEF
AALFDYHLEDDPTEEELTAYAATTGRFALYPYIREYVYDLTGRLALPPLTLEILSRPM

The query sequence (length=138) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5mtw:C 138 138 1.0000 1.0000 1.0000 1.91e-97 5mtw:A, 5mtw:D, 5mtw:B
2 7ook:C 373 95 0.1812 0.0670 0.2632 2.8 7ook:B, 7ook:A
3 3hfr:A 266 54 0.1304 0.0677 0.3333 3.6 3hfr:B
4 6uv8:A 183 31 0.0797 0.0601 0.3548 4.4 6uvb:A
5 5ein:A 344 30 0.1014 0.0407 0.4667 5.2 5ein:B, 5eio:A, 5eio:B, 2ozp:A
6 8gix:E 991 28 0.1014 0.0141 0.5000 6.6
7 1ozb:A 144 23 0.0797 0.0764 0.4783 7.1 1ozb:B, 1ozb:C, 1ozb:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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