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BioLiP
>protein
QRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1fjl:A 65 58 1.0000 0.8923 1.0000 3.12e-36 1fjl:B, 1fjl:C
2 3cmy:A 60 58 0.8448 0.8167 0.8448 8.25e-30
3 3a01:F 61 57 0.7069 0.6721 0.7193 1.49e-25 3a01:B, 3lnq:A
4 8osb:E 62 56 0.6552 0.6129 0.6786 9.55e-25
5 2lkx:A 68 58 0.6379 0.5441 0.6379 9.87e-21
6 9b8u:B 66 51 0.5690 0.5000 0.6471 6.76e-20 9b8u:A, 9b8u:C, 9b8u:D
7 8ejo:A 56 54 0.5172 0.5357 0.5556 4.78e-16 8ejo:B, 8ejp:A, 8ejp:B
8 6e8c:A 135 54 0.5517 0.2370 0.5926 1.45e-15 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
9 6e8c:A 135 49 0.4138 0.1778 0.4898 1.58e-11 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
10 8pna:A 67 57 0.4310 0.3731 0.4386 5.76e-13 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
11 4rdu:D 62 57 0.4138 0.3871 0.4211 9.46e-13 4rdu:A, 4xrs:I, 4xrs:G
12 1ig7:A 58 57 0.4310 0.4310 0.4386 1.21e-11
13 5hod:A 61 54 0.4138 0.3934 0.4444 2.89e-11 5hod:D
14 2me6:A 71 57 0.3966 0.3239 0.4035 3.76e-11
15 8eml:A 58 56 0.4310 0.4310 0.4464 5.93e-11 8eml:B
16 2h1k:B 60 57 0.4483 0.4333 0.4561 5.09e-10 2h1k:A
17 1jgg:A 57 53 0.4310 0.4386 0.4717 6.96e-09 1jgg:B
18 4qtr:C 57 54 0.4138 0.4211 0.4444 9.05e-09 4qtr:A, 4qtr:B, 4qtr:D
19 3rkq:A 58 52 0.3793 0.3793 0.4231 1.10e-08 3rkq:B
20 6m3d:C 108 56 0.3793 0.2037 0.3929 2.69e-08 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
21 6m3d:C 108 53 0.3793 0.2037 0.4151 3.49e-07 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
22 1zq3:P 68 54 0.3793 0.3235 0.4074 2.90e-08
23 3a01:A 78 57 0.3621 0.2692 0.3684 5.76e-08 3a01:E
24 6es3:K 72 54 0.3793 0.3056 0.4074 6.36e-08 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
25 4uus:A 67 55 0.3966 0.3433 0.4182 8.00e-08 4uus:E
26 1b72:A 68 54 0.3793 0.3235 0.4074 1.16e-07
27 8ik5:C 67 57 0.3793 0.3284 0.3860 1.49e-07 8ike:C, 8ilw:C
28 4cyc:A 66 55 0.3966 0.3485 0.4182 1.52e-07 1b8i:A
29 1puf:A 77 57 0.3793 0.2857 0.3860 2.22e-07 2lp0:A
30 5eea:G 63 57 0.3621 0.3333 0.3684 2.66e-07 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
31 2ld5:A 67 57 0.3448 0.2985 0.3509 3.06e-07
32 1ahd:P 68 57 0.3966 0.3382 0.4035 3.27e-07
33 2r5z:A 75 56 0.3966 0.3067 0.4107 4.37e-07 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
34 5zjr:A 64 57 0.3966 0.3594 0.4035 8.47e-07 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
35 1nk2:P 77 58 0.3621 0.2727 0.3621 1.03e-06 1nk3:P
36 4rbo:A 55 50 0.3103 0.3273 0.3600 1.73e-06 4rbo:D
37 5flv:M 229 48 0.3448 0.0873 0.4167 2.69e-06 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
38 1le8:A 53 40 0.2586 0.2830 0.3750 1.22e-04 1akh:A, 1yrn:A
39 5wc9:A 136 51 0.3448 0.1471 0.3922 2.48e-04 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
40 1lfu:P 82 46 0.2586 0.1829 0.3261 2.83e-04 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
41 3d1n:I 150 57 0.3103 0.1200 0.3158 2.94e-04 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
42 4egc:A 539 42 0.2759 0.0297 0.3810 4.52e-04
43 4j19:A 77 70 0.3621 0.2727 0.3000 0.001 4j19:B
44 1gt0:C 137 54 0.2931 0.1241 0.3148 0.025 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
45 8g8e:X 140 54 0.2759 0.1143 0.2963 0.033 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
46 4xrm:B 64 32 0.2241 0.2031 0.4062 0.25 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
47 8bx1:A 127 40 0.2069 0.0945 0.3000 0.26
48 7xrc:C 134 52 0.2759 0.1194 0.3077 0.31 2xsd:C
49 3l1p:A 147 40 0.2069 0.0816 0.3000 0.36 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
50 6fqp:A 67 32 0.2069 0.1791 0.3750 3.0 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
51 2h8r:A 176 73 0.3276 0.1080 0.2603 3.6 2h8r:B
52 5mhf:D 767 19 0.1379 0.0104 0.4211 5.0 5mhf:A, 5mhf:B, 5mhf:C
53 4dna:A 461 28 0.1897 0.0239 0.3929 5.9 4dna:B
54 6btl:A 492 34 0.2241 0.0264 0.3824 6.6 6btl:B, 6bu7:A, 6bu7:B, 4nev:A, 4nev:B, 7nvp:AAA, 7nvp:BBB, 6oex:B, 6oex:A, 6oey:B, 6oey:A, 6oez:B, 6oez:A, 8pf3:A, 8pf3:B, 8pf3:C, 8pf3:D, 8pf4:A, 8pf4:B, 8pf4:C, 8pf4:D, 8pf5:A, 8pf5:B, 8pf5:C, 8pf5:D, 6rb5:A, 6rb5:B, 5s9s:A, 5s9s:B, 5s9t:A, 5s9t:B, 5s9u:A, 5s9u:B, 5s9v:A, 5s9v:B, 5s9w:A, 5s9w:B, 5s9x:A, 5s9x:B, 5s9y:A, 5s9y:B, 5s9z:A, 5s9z:B, 5sa0:A, 5sa0:B, 5sa1:A, 5sa1:B, 5sa2:A, 5sa2:B, 5sa3:A, 5sa3:B, 5smj:A, 5smj:B, 2wba:A, 2wba:B, 2woi:A, 2woi:B, 2woi:C, 2woi:D, 2wov:A, 2wov:B, 2wov:C, 2wov:D, 2wow:A, 2wow:B, 2wow:C, 2wow:D, 2wp5:A, 2wp5:B, 2wp5:C, 2wp5:D, 2wp6:A, 2wp6:B, 2wp6:C, 2wp6:D, 2wpc:A, 2wpc:B, 2wpc:C, 2wpc:D, 2wpe:A, 2wpe:B, 2wpe:C, 2wpe:D, 2wpf:A, 2wpf:B, 2wpf:C, 2wpf:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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