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BioLiP
>protein
QRCGEQGSNMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQG
GPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYC
GAGCQSGGCDG

The query sequence (length=171) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4aml:A 171 171 0.9942 0.9942 0.9942 7.18e-112 4aml:B, 2cwg:B, 2cwg:A, 1wgc:A, 1wgc:B, 2wgc:B, 2x3t:A, 2x3t:B, 2x3t:C, 2x3t:D, 2x52:A, 2x52:B
2 6sto:A 165 168 0.6667 0.6909 0.6786 3.97e-63 6sto:B, 6stp:A, 6stp:B
3 6sto:A 165 127 0.4035 0.4182 0.5433 1.53e-34 6sto:B, 6stp:A, 6stp:B
4 1uha:A 82 79 0.2456 0.5122 0.5316 1.94e-17
5 1uha:A 82 78 0.2222 0.4634 0.4872 5.46e-16
6 1uha:A 82 36 0.0936 0.1951 0.4444 0.005
7 4wp4:A 43 30 0.1345 0.5349 0.7667 3.46e-09
8 4wp4:A 43 33 0.1111 0.4419 0.5758 2.04e-05
9 4wp4:A 43 31 0.0994 0.3953 0.5484 1.50e-04
10 4wp4:A 43 40 0.1170 0.4651 0.5000 1.82e-04
11 6lnr:A 292 26 0.0877 0.0514 0.5769 1.4
12 6lnr:A 292 27 0.0877 0.0514 0.5556 4.2
13 5mwb:A 118 101 0.1813 0.2627 0.3069 6.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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