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BioLiP
>protein
QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4a4e:A 64 58 1.0000 0.9062 1.0000 1.62e-39 4a4g:A, 4qq6:A, 7w2p:A, 7w30:A, 7w30:B, 7w30:C, 7w30:D
2 4a4f:A 64 52 0.4483 0.4062 0.5000 1.80e-09 4a4h:A, 8poi:A
3 5yj8:A 60 56 0.3793 0.3667 0.3929 4.31e-07 8jtn:A, 2lto:A, 6v9t:AAA, 6v9t:BBB
4 2m0o:A 79 33 0.2241 0.1646 0.3939 0.26
5 5m9n:A 202 48 0.3103 0.0891 0.3750 0.33 5m9n:B
6 5xfo:A 315 33 0.2241 0.0413 0.3939 1.4 8h43:A, 8h43:B, 8h43:C, 4hcz:A, 4hcz:B, 7lky:B, 7lky:H, 7lky:A, 7lky:C, 7lky:D, 7lky:E, 7lky:F, 7lky:G, 6wat:AA, 6wat:AC, 6wat:BA, 6wat:BC, 6wat:CA, 6wat:CC, 6wat:DA, 6wat:DC, 6wat:EC, 6wat:EA, 6wat:FA, 6wat:FC, 6wat:GA, 6wat:GC, 6wat:HA, 6wat:HC, 6wat:IA, 6wat:IC, 6wat:JA, 6wat:JC, 6wat:KA, 6wat:KC, 6wat:OC, 6wat:LA, 6wat:LC, 6wat:MA, 6wat:MC, 6wat:NA, 6wat:NC, 6wat:OA, 6wav:A, 6wav:C, 6wav:B, 6wav:D, 5xfn:A, 5xfp:B, 5xfp:A, 5xfp:E, 5xfq:A, 5xfq:B
7 5xfr:A 309 33 0.1897 0.0356 0.3333 2.8 5xfr:B
8 3ukk:A 517 24 0.2069 0.0232 0.5000 2.9 4gde:A, 4gde:B, 4gde:C, 4gde:D, 5hhf:A, 5hhf:B, 5hhf:C, 5hhf:D, 4u8i:A, 4u8i:B, 4u8i:C, 4u8i:D, 4u8j:A, 4u8j:B, 4u8j:C, 4u8j:D, 4u8k:A, 4u8k:B, 4u8k:C, 4u8k:D, 4u8l:A, 4u8l:B, 4u8l:C, 4u8l:D, 4u8m:A, 4u8m:B, 4u8m:C, 4u8m:D, 4u8n:A, 4u8n:B, 4u8n:C, 4u8n:D, 4u8o:A, 4u8o:B, 4u8o:C, 4u8o:D, 4u8p:A, 4u8p:B, 4u8p:C, 4u8p:D, 3uka:A, 3uka:B, 3uka:C, 3uka:D, 3ukf:A, 3ukf:B, 3ukf:C, 3ukf:D, 3ukf:E, 3ukf:F, 3ukf:G, 3ukf:H, 3ukh:A, 3ukh:B, 3ukh:C, 3ukh:D, 3ukh:E, 3ukh:F, 3ukh:G, 3ukh:H, 3ukk:B, 3ukk:C, 3ukk:D, 3ukl:A, 3ukl:B, 3ukl:C, 3ukl:D, 3ukl:E, 3ukl:F, 3ukl:G, 3ukl:H, 3ukp:A, 3ukp:B, 3ukp:C, 3ukp:D, 3ukp:E, 3ukp:F, 3ukp:G, 3ukp:H, 3ukq:A, 3ukq:B, 3ukq:C, 3ukq:D, 3ute:A, 3ute:B, 3ute:C, 3ute:D, 3utf:A, 3utf:B, 3utf:C, 3utf:D, 3utg:A, 3utg:B, 3utg:C, 3utg:D, 3uth:A, 3uth:B, 3uth:C, 3uth:D, 5vwt:A, 5vwt:B, 5vwt:C, 5vwt:D, 5vwu:A, 5vwu:B, 5vwu:C, 5vwu:D, 4wx1:A, 4wx1:B, 4wx1:C, 4wx1:D
9 4hd5:A 316 42 0.2414 0.0443 0.3333 3.2 4v33:A, 4v33:B
10 4y81:C 240 34 0.2241 0.0542 0.3824 3.5
11 8c93:D 162 32 0.2069 0.0741 0.3750 6.9 8c97:D, 9cl9:D
12 6rfl:Y 600 44 0.1897 0.0183 0.2500 7.0 7aoh:Y, 8c8h:Y

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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