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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QQVIKDLFYVVPLSRNCEKIYKNKTHILLGISPFNSKFSQNYIHQLIDWSSKNFKNVTVLLAGDEAKNLLEALGTPTTKA
ERKVRKEIRRHFRFSEEALRKNGREIDIYTFSDFKNNKIYNEVYQNVIYYFEKDEKFRKSCLAMSHDALSSAAKSLNMED
IEITDNMLFHAVKYVLAELPFFLSGASILGYKESVLAYHRPWKLGEKIKNSEFYIKMSDNQGYIILKQIN

The query sequence (length=230) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7azu:A 230 230 1.0000 1.0000 1.0000 7.16e-173 6ztu:A
2 3oqj:B 220 222 0.4957 0.5182 0.5135 3.51e-80 3oqj:A
3 4q24:A 224 211 0.2304 0.2366 0.2512 7.76e-16
4 7rd1:J 942 50 0.0652 0.0159 0.3000 1.8 7rd1:L, 7rd1:A, 7rd1:C, 7rd1:D, 7rd1:F, 7rd1:B, 7rd1:E, 7rd1:G, 7rd1:H, 7rd1:K, 7rd1:I
5 2obe:A 915 50 0.0652 0.0164 0.3000 1.8 2obe:B, 2obe:C
6 6rxu:UT 2033 62 0.0826 0.0093 0.3065 2.9 6rxv:UT, 6rxx:UT, 6rxz:UT
7 6cbd:A 787 145 0.1739 0.0508 0.2759 3.8 5wea:A
8 7yav:A 501 44 0.0652 0.0299 0.3409 4.1 7yav:B
9 6hr8:A 397 39 0.0435 0.0252 0.2564 4.6 6hr8:B, 6hr8:C, 6hr8:D, 6hr8:E, 6hr8:F
10 3qde:A 811 95 0.0870 0.0247 0.2105 4.8 8ho8:A, 8ho8:B, 3qde:B
11 5twa:A 161 53 0.0739 0.1056 0.3208 6.3 5twa:B
12 6s8f:F 2571 37 0.0609 0.0054 0.3784 6.8 7mq8:NR, 7mq9:NR, 7mqa:NR, 6s8f:H
13 5ecg:C 227 30 0.0478 0.0485 0.3667 7.9 5ecg:D, 1gzh:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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