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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAA
RIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRL
EHLTKANGIEHSDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL
AWHPENRNAVIMVDLAGDISPLLELDAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVD
NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQ
GYADELQMLVQQYADDKEKVALLKALWQYADEI

The query sequence (length=433) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2qxf:A 433 433 1.0000 1.0000 1.0000 0.0
2 4js4:A 468 467 0.9954 0.9209 0.9229 0.0 3c94:A, 4hcb:A, 4hcb:B, 4hcc:A, 4hcc:B, 3hl8:A, 3hp9:A, 4jrp:A, 4jrp:B, 4jrq:A, 4jrq:B, 4js4:B, 4js5:A, 4js5:B
3 5njk:A 147 73 0.0508 0.1497 0.3014 0.039 5njj:A, 5njj:C, 5njj:B, 5njj:D, 5njk:E, 5njk:C, 5njk:D, 5njk:B, 5njk:F
4 6a4d:A 184 50 0.0393 0.0924 0.3400 0.041 6a4d:B, 6a4e:A, 6a4e:C, 6a4f:A, 6a4f:B
5 6w6h:C 636 82 0.0624 0.0425 0.3293 0.58 6w6e:B, 6w6e:C, 6w6g:A, 6w6g:B, 6w6g:C, 6w6h:A, 6w6h:B, 6w6h:F, 6w6i:A, 6w6i:B, 6w6i:C, 6w6j:A, 6w6j:B, 6w6j:C
6 6w6i:F 605 82 0.0624 0.0446 0.3293 0.60 6w6j:F
7 7l6n:C 675 82 0.0624 0.0400 0.3293 0.63 7l6n:A, 7l6n:B, 6w6e:A
8 5zgc:F 212 33 0.0300 0.0613 0.3939 0.65 6iso:K
9 8bbk:A 274 33 0.0300 0.0474 0.3939 0.68 8bbk:B, 8bbk:C, 8bbk:D, 8bbk:E, 8bbk:F, 4bn4:A, 4bn5:A, 4bn5:B, 4bn5:C, 4bn5:D, 4bn5:E, 4bn5:F, 4bn5:G, 4bn5:H, 4bn5:I, 4bn5:J, 4bn5:K, 4bn5:L, 4bv3:A, 4bvb:A, 4bve:A, 4bvf:A, 4bvg:A, 4bvh:A, 4bvh:B, 4bvh:C, 5bwn:A, 5bwo:A, 4c78:A, 4c7b:A, 9cbt:A, 9cbt:B, 8ccw:A, 8ccz:A, 8ccz:B, 5d7n:A, 5d7n:B, 5d7n:C, 5d7n:D, 5d7n:E, 5d7n:F, 4fvt:A, 4fz3:A, 3glr:A, 3gls:A, 3gls:B, 3gls:C, 3gls:D, 3gls:E, 3gls:F, 3glt:A, 3glu:A, 5h4d:H, 5h4d:A, 4hd8:A, 8hlw:A, 8hly:A, 8hn9:A, 8hn9:B, 6iso:A, 6iso:B, 6iso:E, 6iso:G, 4jsr:A, 4jt8:A, 4jt9:A, 4o8z:A, 8v15:A, 8v15:C, 8v2n:A, 5y4h:A, 5ytk:A, 5ytk:D, 5ytk:E, 5ytk:F, 5ytk:B, 5ytk:C, 5z93:A, 5z94:A, 5z94:B, 5zgc:A, 5zgc:B, 5zgc:C, 5zgc:E, 5zgc:D
10 6iso:I 248 33 0.0300 0.0524 0.3939 0.76
11 2fty:A 532 62 0.0416 0.0338 0.2903 2.7 2fty:B, 2fty:C, 2fty:D, 2fvk:A, 2fvk:B, 2fvk:C, 2fvk:D, 2fvm:A, 2fvm:B, 2fvm:C, 2fvm:D
12 3qb5:K 222 71 0.0462 0.0901 0.2817 3.1
13 6n6a:A 181 39 0.0300 0.0718 0.3333 4.2 6n6c:A, 6n6d:A, 6n6e:A, 6n6f:A, 6n6g:A, 6n6h:A
14 2igi:A 180 51 0.0300 0.0722 0.2549 4.3 2igi:B, 7vh4:C
15 4mif:B 581 89 0.0531 0.0396 0.2584 6.6 4mif:A, 4mif:C, 4mif:D, 4mig:A, 4mig:B, 4mig:C, 4mig:D, 4mih:A, 4mih:B, 4mih:C, 4mih:D, 4mih:E, 4mih:F, 4mih:G, 4mih:H
16 5ucd:A 435 96 0.0554 0.0552 0.2500 6.6 5ucd:B
17 4yu6:A 754 44 0.0254 0.0146 0.2500 6.9 4yu5:A, 4yu5:B, 4yu6:B
18 3d9k:B 141 40 0.0300 0.0922 0.3250 7.4 3d9k:A, 3d9l:A, 3d9l:B, 3d9m:A, 3d9m:B, 3d9n:A, 3d9n:B, 3d9o:B, 3d9p:A, 3d9p:B
19 1g6u:A 48 36 0.0300 0.2708 0.3611 8.1 1g6u:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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