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BioLiP
>protein
QQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ

The query sequence (length=41) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1fav:A 78 41 1.0000 0.5256 1.0000 1.30e-22 6j5e:G, 6tvq:AaA, 6tvu:AaA, 6tvw:CCC, 3vgx:C, 3vu5:A, 3vu6:A, 3w19:C, 5yb4:E, 5yb4:F, 5yb4:D
2 6x5b:B 149 41 0.9024 0.2483 0.9024 4.90e-20 6x5b:E, 6x5b:K, 6x5c:B, 6x5c:G, 6x5c:F
3 6pwu:A 615 41 0.9024 0.0602 0.9024 1.65e-19 6j5e:I, 6ulc:C, 6ulc:A, 3vtp:C, 5yb2:E, 5yb2:F, 5yb2:D, 5yb2:A, 5yb2:B, 5yb2:C, 5yb2:M, 5yb3:E, 5yb3:F, 5yb3:D, 5yc0:A, 5yc0:D, 5yc0:E, 5z0w:E, 5zcx:A, 5zpw:A, 5zpw:E, 5zpw:C
4 7n6u:B 595 41 0.9024 0.0622 0.9024 3.22e-19 5fuu:A, 5fuu:D, 5fuu:E, 5fuu:F, 6j5e:K, 7n6u:C, 7n6u:A, 7n6w:A, 7n6w:B, 7n6w:C, 6olp:C, 7ska:B, 7ska:O, 7ska:Z, 6vpx:C, 5y14:C, 5y14:A, 5y14:B, 5yc0:B, 5yc0:C, 5yc0:F
5 2kp8:A 72 35 0.8537 0.4861 1.0000 1.12e-17 2kp8:B
6 7ucf:B 137 41 0.7073 0.2117 0.7073 3.50e-11 5t3x:B, 7t75:B, 7t9a:D, 7t9b:D, 7t9b:F
7 6opn:B 124 25 0.5366 0.1774 0.8800 7.75e-10 6opn:E, 6opn:H
8 6ohy:B 120 23 0.4878 0.1667 0.8696 1.78e-08 6ohy:E, 6ohy:F
9 1czq:A 45 19 0.4146 0.3778 0.8947 1.94e-05 1gzl:A, 1gzl:B, 3l35:A, 3l35:C, 3l35:B, 3l36:A, 3l37:A, 3mgn:D, 3mgn:F, 3mgn:A, 3mgn:C, 3mgn:E, 3mgn:B, 6psa:A, 2q3i:A, 2r3c:A, 2r3c:B, 2r5b:A, 2r5b:C, 2r5b:B, 2r5d:A, 2r5d:C, 2r5d:B
10 1rm6:B 323 36 0.2439 0.0310 0.2778 8.5 1rm6:E, 1sb3:B, 1sb3:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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