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BioLiP
>protein
QQKQRQKHFNRQIPAAASLIQTAWRCYAAENPDSSTWKIYIEFSQLREHHRATIKVIRRMQYFVAKKKFQQARKP

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4umo:B 96 75 1.0000 0.7812 1.0000 2.81e-51
2 7xnk:A 348 75 0.9467 0.2040 0.9467 1.57e-44 7tci:A, 7tci:G, 7tci:E, 7tci:C, 4umo:A, 6v01:A, 6v01:J, 6v01:D, 6v01:G, 7xnk:C, 7xnk:E, 7xnk:G, 7xnl:A, 7xnl:C, 7xnl:E, 7xnl:G, 7xnn:B, 7xnn:G, 7xnn:C, 7xnn:E
3 7cr7:A 354 78 0.3733 0.0791 0.3590 5.88e-10 7cr1:A, 7cr1:B, 7cr1:C, 7cr1:D, 7cr2:B, 7cr2:C, 7cr2:D, 7cr2:A, 7cr4:A, 7cr4:B, 7cr4:D, 7cr4:F, 7cr7:G, 7cr7:B, 7cr7:D, 8ijk:A, 8ijk:C, 8ijk:B, 8ijk:D, 8izy:A, 8izy:B, 8izy:D, 8izy:C, 8j01:G, 8j01:A, 8j01:B, 8j01:D, 8j02:G, 8j02:A, 8j02:B, 8j02:D, 8j03:A, 8j03:D, 8j03:G, 8j03:I, 8j04:A, 8j04:G, 8j04:B, 8j04:D, 8w4u:A, 8w4u:B, 8w4u:D, 8w4u:G
4 7byl:A 354 78 0.3467 0.0734 0.3333 1.58e-09 7byl:C, 7byl:E, 7byl:G, 7bym:A, 7bym:C, 7bym:E, 7bym:G, 7byn:A, 7byn:C, 7byn:E, 7byn:G, 7vnp:A, 7vnp:C, 7vnp:G, 7vnp:E, 7vnq:A, 7vnq:C, 7vnq:E, 7vnq:G
5 7vnr:A 333 75 0.3200 0.0721 0.3200 1.70e-07 7vnr:C, 7vnr:E, 7vnr:G
6 8x43:A 327 75 0.3067 0.0703 0.3067 4.75e-07 8j00:A, 8j00:B, 8j00:C, 8j00:D, 8x43:G, 8x43:C, 8x43:E
7 3w8w:B 461 22 0.1200 0.0195 0.4091 0.79 6foq:A, 6foq:B, 6foq:C, 6foq:D, 6fow:A, 6fow:B, 6fow:C, 6fow:D, 6fp3:A, 6fp3:B, 6fp3:C, 6fp3:D, 6fy8:A, 6fy9:A, 6fya:A, 6fya:B, 6fyb:A, 6fyb:B, 6fyb:C, 6fyb:D, 6fyc:A, 6fyc:B, 6fyd:A, 6fyd:B, 6fyd:C, 6fyd:D, 6fye:A, 6fye:B, 6fyf:A, 6fyf:B, 6fyf:C, 6fyf:D, 6fyg:A, 6fyg:B, 6fyg:C, 6fyg:D, 3w8w:A, 3w8x:A, 3w8x:B, 3w8z:A, 3w8z:B, 4xlo:A, 4xlo:B, 4xlo:C, 4xlo:D
8 2ycl:B 309 49 0.1733 0.0421 0.2653 1.0 2h9a:B
9 8em4:A 3818 15 0.1333 0.0026 0.6667 1.4 8em4:B
10 8em7:A 4378 15 0.1333 0.0023 0.6667 1.4 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
11 8gc2:D 760 43 0.1733 0.0171 0.3023 2.2 8f0o:B, 8gc2:A, 8gc2:B, 8gc2:C, 8gc3:B, 8gc3:C, 8gc3:D, 8gc3:A, 8gc4:A, 8gc4:B, 8gc4:C, 8gc4:D, 8gc5:A, 8gc5:B, 8gc5:C, 8gc5:D, 5kuf:A, 5kuf:B, 5kuf:C, 5kuf:D
12 6efi:B 208 30 0.1867 0.0673 0.4667 2.3 6efi:A
13 8any:AH 140 26 0.1200 0.0643 0.3462 2.4 7a5f:H6, 7a5g:H6, 7a5i:H6, 7a5k:H6, 5aj3:J, 5aj4:AJ, 8csp:H, 8cst:H, 6gaw:AJ, 6gaz:AJ, 3j9m:AH, 3jd5:J, 8k2a:SJ, 7l08:AH, 6neq:J, 6nf8:J, 7nqh:AJ, 7nql:AJ, 7nsi:AJ, 7nsj:AJ, 6nu2:AH, 6nu3:AH, 7og4:AH, 8oin:AH, 8oip:AH, 8oir:AH, 8ois:AH, 7p2e:H, 7pnx:H, 7pny:H, 7pnz:H, 7po0:H, 7po1:H, 7po2:H, 7po3:H, 7qi4:AH, 7qi5:AH, 7qi6:AH, 8qrk:H, 8qrl:H, 8qrm:H, 8qrn:H, 6rw4:H, 6rw5:H, 6vlz:AH, 6vmi:AH, 8xt0:SJ, 8xt2:SJ, 6ydp:AJ, 6ydw:AJ, 6zm5:AH, 6zm6:AH, 6zs9:AH, 6zsa:AH, 6zsb:AH, 6zsc:AH, 6zsd:AH, 6zse:AH, 6zsg:AH
14 9b36:A 842 43 0.1733 0.0154 0.3023 2.5 9b35:A, 9b35:B, 9b35:C, 9b35:D, 9b36:C, 9b36:D, 9b36:B, 9b37:A, 9b37:D, 9b37:B, 9b37:C, 9b39:A, 9b39:B, 9b39:C, 9b39:D, 8fwq:A, 8fwq:D, 8fwq:B, 8fwq:C, 8fws:A, 8fws:D, 8fws:B, 8fws:C, 8fwu:A, 8fwu:B, 8fwu:C, 8fwu:D, 8fww:A, 8fww:D, 8fww:B, 8fww:C, 3h6g:A, 3h6g:B, 3h6h:A, 3h6h:B
15 4uqq:A 693 43 0.1733 0.0188 0.3023 2.6 9b38:A, 9b38:B, 9b38:C, 9b38:D, 4uqq:B, 4uqq:C, 4uqq:D
16 6p4u:A 843 34 0.1867 0.0166 0.4118 2.9 6ozv:A, 6p3i:A
17 5kuh:A 636 43 0.1733 0.0204 0.3023 3.2 4bdl:A, 4bdl:B, 4bdm:A, 4bdm:B, 4bdm:C, 4bdm:D, 4bdn:A, 4bdn:B, 4bdn:C, 4bdn:D, 4bdo:A, 4bdo:B, 4bdo:C, 4bdo:D, 4bdq:A, 4bdq:B, 4bdr:A, 4bdr:B, 5cmk:A, 5cmk:B, 5cmm:A, 3g3f:A, 3g3f:B, 3g3g:A, 3g3g:B, 3g3h:A, 3g3h:B, 3g3i:A, 3g3i:B, 3g3j:A, 3g3j:B, 3g3k:A, 3g3k:B, 4h8i:A, 2i0b:A, 2i0b:B, 2i0b:C, 2i0c:A, 2i0c:B, 5kuh:B, 5kuh:C, 5kuh:D, 3qxm:A, 3qxm:B, 8r32:A, 8r32:B, 1s50:A, 1s7y:A, 1s7y:B, 1s9t:A, 1s9t:B, 1sd3:A, 1sd3:B, 1tt1:A, 1tt1:B, 2xxr:A, 2xxr:B, 2xxt:A, 2xxt:B, 2xxu:A, 2xxu:B, 2xxv:A, 2xxv:B, 2xxw:A, 2xxw:B, 2xxx:A, 2xxx:B, 2xxx:C, 2xxx:D, 2xxy:A, 2xxy:B, 2xxy:C, 2xxy:D, 1yae:A, 1yae:B, 1yae:C, 1yae:D, 1yae:E
18 8j62:A 180 54 0.1867 0.0778 0.2593 4.3 8j62:B
19 8joj:A 523 23 0.1200 0.0172 0.3913 5.0 4c3x:A, 4c3x:B, 4c3x:C, 4c3x:D, 4c3x:E, 4c3x:F, 4c3x:G, 4c3x:H, 4c3y:A, 4c3y:B, 4c3y:C, 4c3y:D, 4c3y:E, 4c3y:F, 4c3y:G, 4c3y:H, 8jbz:AAA, 8ju4:A, 8kcz:A
20 5eq2:A 201 30 0.1867 0.0697 0.4667 5.7 5eq2:B, 5eq3:A, 5eq3:B, 5eq4:A, 5eq4:B, 5eq4:C, 5eq4:D, 5iiy:A, 5iiy:B, 5ij1:A, 5ij1:B, 5ij2:A, 5ij2:B, 5ij3:A, 5ij3:B, 5kiq:A, 5kiq:B
21 1z45:A 674 32 0.1333 0.0148 0.3125 7.8
22 7dfz:A 897 34 0.1467 0.0123 0.3235 8.2
23 7df8:A 918 34 0.1467 0.0120 0.3235 8.2
24 7dfw:A 957 34 0.1467 0.0115 0.3235 8.3 7n4u:A, 7n4u:B, 7n4v:A, 7n4v:B, 7n4x:A
25 3mfq:A 278 63 0.2133 0.0576 0.2540 9.7 3mfq:B, 3mfq:C
26 6dlw:A 460 71 0.2267 0.0370 0.2394 9.7 6dlw:B, 6dlw:C, 6dlw:D, 6dlw:E, 6dlw:F, 6dlw:G, 6dlw:H, 6dlw:I, 6dlw:J, 6dlw:K, 6dlw:L, 6dlw:M, 6dlw:N, 6dlw:O, 6dlw:P, 6dlw:Q, 6dlw:R, 6dlw:S, 6dlw:T, 6dlw:U, 6dlw:V

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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