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BioLiP
>protein
QQIKDPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPEND
KPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDI
ISDVKSASTLK

The query sequence (length=171) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1xzo:A 172 172 1.0000 0.9942 0.9942 1.89e-124 1xzo:B
2 4wbr:D 157 158 0.2924 0.3185 0.3165 3.36e-14
3 6n5u:A 161 143 0.2515 0.2671 0.3007 2.90e-09 6n5u:B, 6n5u:C
4 2gqk:A 173 147 0.2398 0.2370 0.2789 1.74e-06 2ggt:A, 2ggt:B, 2gql:A, 2gqm:A, 2gt6:A, 2hrf:A, 2hrn:A
5 2b7j:A 158 159 0.2456 0.2658 0.2642 3.24e-06 2b7j:C
6 2rli:A 170 145 0.2105 0.2118 0.2483 1.26e-05
7 7u4m:A 171 148 0.1871 0.1871 0.2162 0.39 5h5q:A, 5h5r:A, 5h5s:A, 6hkq:A, 7u4i:A, 7u4i:B, 7u4k:A, 7u4l:A, 7u4l:B, 7u4l:D, 7u4n:A, 7u4n:B
8 7qty:A 279 166 0.2456 0.1505 0.2530 0.65 7qu0:A
9 5knm:A 276 55 0.0819 0.0507 0.2545 0.69 5iue:A, 5iue:E, 5iue:G, 5iue:I
10 7qu5:A 280 151 0.2105 0.1286 0.2384 0.73 7qu3:A
11 6vhy:C 540 50 0.0702 0.0222 0.2400 1.2 6vhv:A, 6vhw:A, 6vhw:B, 6vhx:A, 6vhx:B, 6vhy:D, 6vhy:A, 6vhy:B, 6vhz:A, 6vhz:B
12 6pag:A 277 45 0.0643 0.0397 0.2444 2.2 1im9:A, 1im9:E, 6pa1:A, 6pa1:E, 1qqd:A, 5vge:A
13 1dbn:A 239 68 0.1170 0.0837 0.2941 2.3 1dbn:B
14 5eqn:A 270 23 0.0585 0.0370 0.4348 3.8 5eqn:B
15 1j32:A 388 52 0.1053 0.0464 0.3462 4.1 1j32:B
16 5kvu:A 738 107 0.1637 0.0379 0.2617 4.5 5kvu:B, 5kvu:C, 5kvu:D
17 8h10:A 1026 51 0.0936 0.0156 0.3137 4.8 8h0y:B, 8h0z:A, 8h10:B, 8h10:C, 7zh1:A, 7zh1:B, 7zh1:C, 7zh2:A, 7zh2:B, 7zh2:C
18 8h0z:B 1045 51 0.0936 0.0153 0.3137 5.0 8h0x:A, 8h0x:B, 8h0x:C, 8h0y:A, 8h0y:C, 8h0z:C, 8h14:B, 8h14:C, 8h14:A
19 2yp6:A 143 59 0.0994 0.1189 0.2881 6.2 2yp6:B, 2yp6:C, 2yp6:D
20 4grf:A 140 52 0.0877 0.1071 0.2885 7.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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