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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QQIDWDLALIKYYTSYPTALEFSEDFGEQAFLQAVARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALE
QEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMG
VQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFA
AQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAIS
MIGDCYAQNQKELKQYYQQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYSPIEQQWDLLFADYFAEDLKLLAPL
AKDGLVDVDEKGIQVTAKGRLLIRNICMCFDTYL

The query sequence (length=434) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1olt:A 434 434 1.0000 1.0000 1.0000 0.0
2 3f1y:A 318 47 0.0346 0.0472 0.3191 0.66 3f1y:C, 3kia:A, 3kia:C, 3o3p:A, 3o3p:B
3 8auw:A 2900 145 0.0829 0.0124 0.2483 1.4
4 8atu:A 2837 145 0.0829 0.0127 0.2483 1.5 8atu:B, 8atx:A, 8atx:B, 8auk:A, 8auk:B, 8auw:B
5 4jc0:A 424 108 0.0622 0.0637 0.2500 1.6 4jc0:B
6 4rrf:E 140 72 0.0415 0.1286 0.2500 6.4 4rrf:A, 4rrf:B, 4rrf:C, 4rrf:D, 4rrf:F, 4rrg:A, 4rrg:B, 4rrg:C
7 8asw:C 527 62 0.0392 0.0323 0.2742 7.1 8asv:C, 6qk7:C
8 3vkh:B 2908 238 0.1106 0.0165 0.2017 8.9
9 8df7:A 850 34 0.0369 0.0188 0.4706 9.1 8df7:B, 8df8:A, 8df8:B, 8df9:B, 8dfb:A, 8dfb:B, 4gfj:A, 3m6k:B, 3m6z:A, 3m6z:B
10 8df9:A 781 34 0.0369 0.0205 0.4706 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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