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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QQDLPTLFYSGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS
HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGV
YYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD
NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFAKGHQSFQF
QL

The query sequence (length=322) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2dso:C 323 322 0.9969 0.9938 0.9969 0.0 2dg1:A, 2dg1:B, 2dg1:C, 2dg1:D, 2dg1:E, 2dg1:F, 2dso:A, 2dso:B, 2dso:D, 2dso:E, 2dso:F
2 7riz:A 306 254 0.1832 0.1928 0.2323 1.23e-08 8djf:A, 8djz:A, 8dk0:A, 7ris:A
3 7plb:B 289 146 0.1025 0.1142 0.2260 1.11e-05 7plb:A, 7plc:A, 7plc:D, 7plc:B, 7plc:C, 7pld:A, 7pld:B
4 7zqg:A 247 210 0.1460 0.1903 0.2238 8.02e-05 6qsh:A, 7zq2:A
5 7zqg:A 247 213 0.1398 0.1822 0.2113 0.030 6qsh:A, 7zq2:A
6 4gnc:A 298 216 0.1491 0.1611 0.2222 8.69e-05 3g4e:A, 3g4e:B, 3g4h:B, 3g4h:A, 4gnb:A, 4gnb:B, 4gnc:B
7 4gn7:A 297 119 0.1056 0.1145 0.2857 2.13e-04 4gn7:B, 4gn8:A, 4gn8:B, 4gn9:A, 4gn9:B, 4gna:A, 4gna:B
8 6qse:A 251 244 0.1646 0.2112 0.2172 5.52e-04 5chb:B, 5chb:C, 5f53:A, 5i1y:B, 7ov7:A, 7ov7:B, 6qsf:A, 6qsf:B, 6qsg:A, 6rej:A, 6rek:A, 6ren:A, 6ren:B, 7zcj:A, 7zpw:A, 7zpw:D, 7zpz:A
9 6qse:A 251 213 0.1460 0.1873 0.2207 0.001 5chb:B, 5chb:C, 5f53:A, 5i1y:B, 7ov7:A, 7ov7:B, 6qsf:A, 6qsf:B, 6qsg:A, 6rej:A, 6rek:A, 6ren:A, 6ren:B, 7zcj:A, 7zpw:A, 7zpw:D, 7zpz:A
10 3dr2:A 299 149 0.1211 0.1304 0.2617 0.003 3dr2:B
11 5d9b:A 307 99 0.0870 0.0912 0.2828 0.004 5d9c:A, 5d9d:A, 5gtq:A, 5gx1:A, 5gx2:A, 5gx3:A, 5gx4:A, 5gx5:A, 5xfe:A
12 2dkk:A 399 106 0.0994 0.0802 0.3019 0.084 2nz5:A, 2nz5:B, 2nza:A, 2nza:B
13 3d89:A 136 105 0.0807 0.1912 0.2476 0.24
14 3ott:B 739 57 0.0528 0.0230 0.2982 1.0 3ott:A
15 5v85:B 279 28 0.0373 0.0430 0.4286 1.4 5v85:A
16 3fvz:A 329 143 0.1025 0.1003 0.2308 1.8 3fw0:A
17 4a2m:B 750 154 0.1149 0.0493 0.2403 2.5 4a2l:E, 4a2m:A, 4a2m:C, 4a2m:D
18 5a9z:AF 208 39 0.0435 0.0673 0.3590 2.9 5aa0:AF, 7azo:L4A, 7azo:L4B, 7azs:L4A, 7azs:L4B, 9b00:1F, 9b00:2F, 6b4v:G, 6b4v:KB, 6boh:G, 6boh:LB, 6bok:G, 6bok:JB, 6buw:RF, 6buw:YF, 6bz6:RF, 6bz6:YF, 6bz7:RF, 6bz7:YF, 6bz8:RF, 6bz8:YF, 6c5l:BF, 6c5l:DF, 6cae:1F, 6cae:2F, 6cfj:1F, 6cfj:2F, 6cfk:1F, 6cfk:2F, 6cfl:1F, 6cfl:2F, 8cvj:1F, 8cvj:2F, 8cvk:1F, 8cvk:2F, 8cvl:1F, 8cvl:2F, 5czp:YF, 5czp:RF, 6czr:1F, 6czr:2F, 5d8b:C, 5d8b:YA, 5dfe:YF, 5dfe:RF, 5dox:1F, 5dox:2F, 5doy:1F, 5doy:2F, 5e7k:31, 5e7k:39, 5e81:31, 5e81:39, 8ekb:1F, 8ekb:2F, 5el4:31, 5el4:39, 5el5:31, 5el5:39, 5el6:31, 5el6:39, 5el7:31, 5el7:39, 8ev6:1F, 8ev6:2F, 8ev7:1F, 8ev7:2F, 5f8k:1F, 5f8k:2F, 8fc1:1F, 8fc1:2F, 8fc2:1F, 8fc2:2F, 8fc3:1F, 8fc3:2F, 8fc4:1F, 8fc4:2F, 8fc5:1F, 8fc5:2F, 8fc6:1F, 8fc6:2F, 5fdu:1F, 5fdu:2F, 5fdv:1F, 5fdv:2F, 6fkr:1F, 6fkr:2F, 8fom:RF, 8fom:YF, 8fon:RF, 8fon:YF, 8g29:1F, 8g29:2F, 8g2a:1F, 8g2a:2F, 8g2b:1F, 8g2b:2F, 8g2c:1F, 8g2c:2F, 8g2d:1F, 8g2d:2F, 6gsj:31, 6gsj:39, 6gsk:31, 6gsk:39, 6gsl:31, 6gsl:39, 6gzq:E1, 6gzx:E1, 6gzx:E2, 6gzz:E1, 6gzz:E2, 5hau:1F, 5hau:2F, 5hcp:1F, 5hcp:2F, 5hcq:1F, 5hcq:2F, 5hcr:1F, 5hcr:2F, 5hd1:1F, 5hd1:2F, 5ib7:31, 5ib7:39, 5ib8:31, 5ib8:39, 5ibb:31, 5ibb:39, 5imq:c, 5imr:c, 5j30:RF, 5j30:YF, 5j3c:RF, 5j3c:YF, 5j4b:1F, 5j4b:2F, 5j4c:1F, 5j4c:2F, 5j4d:G, 5j4d:LB, 5j8b:F, 7jql:1F, 7jql:2F, 7jqm:1F, 7jqm:2F, 4l47:RF, 4l47:YF, 4l71:RF, 4l71:YF, 4lel:RF, 4lel:YF, 4lfz:RF, 4lfz:YF, 7lh5:BF, 7lh5:DF, 4lnt:RF, 4lnt:YF, 4lsk:RF, 4lsk:YF, 4lt8:RF, 4lt8:YF, 7md7:1F, 7md7:2F, 6n1d:AL04, 6n1d:BL04, 6n9e:1F, 6n9e:2F, 6n9f:1F, 6n9f:2F, 5ndj:31, 5ndj:39, 5ndk:31, 5ndk:39, 6nd5:1F, 6nd5:2F, 6nd6:1F, 6nd6:2F, 6ndk:RF, 6ndk:YF, 6nsh:RF, 6nsh:YF, 6nta:RF, 6nta:YF, 6nuo:RF, 6nuo:YF, 6nwy:RF, 6nwy:YF, 6o3m:RF, 6o3m:YF, 6o97:1F, 6o97:2F, 6of1:1F, 6of1:2F, 6of6:RF, 6of6:YF, 6oj2:RF, 6oj2:YF, 6ope:RF, 6ope:YF, 6ord:RF, 6ord:YF, 6osi:RF, 6osi:YF, 5ot7:i, 6otr:RF, 6otr:YF, 6oxa:RF, 6oxa:YF, 6oxi:RF, 6oxi:YF, 4p6f:RF, 4p6f:YF, 4p70:RF, 4p70:YF, 6q95:D, 6qnq:31, 6qnq:39, 6qnr:31, 6qnr:39, 7rq8:1F, 7rq8:2F, 7rq9:1F, 7rq9:2F, 7rqa:1F, 7rqa:2F, 7rqb:1F, 7rqb:2F, 7rqc:1F, 7rqc:2F, 7rqd:1F, 7rqd:2F, 7rqe:1F, 7rqe:2F, 8t8b:1F, 8t8b:2F, 8t8c:1F, 8t8c:2F, 4tua:RF, 4tua:YF, 4tub:RF, 4tub:YF, 4tuc:RF, 4tuc:YF, 4tud:RF, 4tud:YF, 4tue:RF, 4tue:YF, 7u2h:1F, 7u2h:2F, 7u2i:1F, 7u2i:2F, 7u2j:1F, 7u2j:2F, 6ucq:1F, 6ucq:2F, 8ud6:1F, 8ud6:2F, 8ud7:1F, 8ud7:2F, 8ud8:1F, 8ud8:2F, 6uo1:1F, 6uo1:2F, 5uq7:F, 5uq8:F, 8uvr:1F, 8uvr:2F, 8uvs:1F, 8uvs:2F, 4v4i:D, 4v4j:D, 4v4x:BF, 4v4y:BF, 4v4z:BF, 4v51:BF, 4v51:DF, 4v5a:BF, 4v5a:DF, 4v5c:BF, 4v5c:DF, 4v5d:BF, 4v5d:DF, 4v5e:BF, 4v5e:DF, 4v5f:BF, 4v5f:DF, 4v5g:BF, 4v5g:DF, 4v5j:BF, 4v5j:DF, 4v5k:BF, 4v5k:DF, 4v5l:BF, 4v5m:BF, 4v5n:BF, 4v5p:BF, 4v5p:DF, 4v5q:BF, 4v5q:DF, 4v5r:BF, 4v5r:DF, 4v5s:BF, 4v5s:DF, 4v63:BF, 4v63:DF, 4v67:BF, 4v67:DF, 4v68:BF, 4v6a:BF, 4v6a:DF, 4v6f:AF, 4v6f:DF, 4v6g:BF, 4v6g:DF, 4v7j:AF, 4v7j:BF, 4v7k:AF, 4v7k:BF, 4v7l:BF, 4v7l:DF, 4v7m:BF, 4v7m:DF, 4v7p:BE, 4v7p:CE, 4v7w:BF, 4v7w:DF, 4v7x:BF, 4v7x:DF, 4v7y:BF, 4v7y:DF, 4v7z:BF, 4v7z:DF, 4v83:BE, 4v83:DE, 4v84:BE, 4v84:DE, 4v87:AF, 4v87:DF, 4v8a:AF, 4v8a:BF, 4v8b:BF, 4v8b:DF, 4v8c:AF, 4v8c:BF, 4v8d:BF, 4v8d:DF, 4v8e:AF, 4v8e:CF, 4v8f:AF, 4v8f:DF, 4v8g:BF, 4v8g:DF, 4v8h:BF, 4v8h:DF, 4v8i:BF, 4v8i:DF, 4v8j:BF, 4v8j:DF, 4v8n:BF, 4v8n:DF, 4v8o:BF, 4v8q:AF, 4v8u:BF, 4v8u:DF, 4v8x:BF, 4v8x:DF, 5v8i:1F, 5v8i:2F, 4v90:BF, 4v95:BF, 4v95:DF, 4v97:BF, 4v97:DF, 4v9a:BF, 4v9a:DF, 4v9b:BF, 4v9b:DF, 4v9h:BF, 4v9i:BF, 4v9i:DF, 4v9j:BF, 4v9j:DF, 4v9k:BF, 4v9k:DF, 4v9l:BF, 4v9l:DF, 4v9m:BF, 4v9m:DF, 4v9n:BF, 4v9n:DF, 4v9q:AF, 4v9q:CF, 4v9r:BF, 4v9r:DF, 4v9s:BF, 4v9s:DF, 5vp2:1F, 5vp2:2F, 5vpo:RF, 5vpo:YF, 5vpp:RF, 5vpp:YF, 8vtu:1F, 8vtu:2F, 8vtv:1F, 8vtv:2F, 8vtw:1F, 8vtw:2F, 8vtx:1F, 8vtx:2F, 8vty:1F, 8vty:2F, 1vvj:RF, 1vvj:YF, 1vy4:BF, 1vy4:DF, 1vy5:BF, 1vy5:DF, 1vy6:BF, 1vy6:DF, 1vy7:BF, 1vy7:DF, 4w29:BF, 4w29:DF, 4w2e:F, 4w2f:BF, 4w2f:DF, 4w2g:BF, 4w2g:DF, 4w2h:BF, 4w2h:DF, 4w2i:BF, 4w2i:DF, 4w4g:RF, 4w4g:YF, 5w4k:1F, 5w4k:2F, 5wis:1F, 5wis:2F, 5wit:1F, 5wit:2F, 4wpo:AF, 4wpo:CF, 4wq1:31, 4wq1:39, 4wqf:AF, 4wqf:CF, 4wqr:31, 4wqr:39, 4wqu:AF, 4wqu:CF, 4wqy:AF, 4wqy:CF, 4wr6:31, 4wr6:39, 4wra:31, 4wra:39, 4wro:31, 4wsd:31, 4wsd:39, 4wsm:31, 4wsm:39, 4wt1:31, 4wt1:39, 4wt8:CD, 4wt8:DD, 4wu1:31, 4wu1:39, 4wzd:31, 4wzd:39, 4wzo:31, 4wzo:39, 4xej:AL04, 4xej:BL04, 6xhv:1F, 6xhv:2F, 6xhw:1F, 6xhw:2F, 6xhx:1F, 6xhx:2F, 6xhy:1F, 6xhy:2F, 6xqd:1F, 6xqd:2F, 6xqe:1F, 6xqe:2F, 4y4o:1F, 4y4o:2F, 4y4p:1F, 4y4p:2F, 4ypb:RF, 4ypb:YF, 4yzv:RF, 4yzv:YF, 4z3s:1F, 4z3s:2F, 4z8c:1F, 4z8c:2F, 4zer:1F, 4zer:2F, 5zlu:b, 4zsn:RF, 4zsn:YF
19 6day:D 273 49 0.0435 0.0513 0.2857 3.4 6day:A, 6day:B, 6day:C, 6ofw:A, 6ofw:B, 6q62:A, 6q62:C, 6q62:D, 6q62:B
20 5ks7:A 123 68 0.0435 0.1138 0.2059 4.0 5ks7:B
21 6h0a:A 339 43 0.0466 0.0442 0.3488 4.2 6g82:A, 6gmu:A, 4hho:A, 4hhq:A, 4q1u:A, 3sre:A, 3srg:A, 1v04:A
22 7pao:9 682 74 0.0652 0.0308 0.2838 4.5 7paq:9, 7par:9, 7pib:9, 7pis:9, 7pit:9
23 6zea:A 308 166 0.1180 0.1234 0.2289 5.6
24 7waq:D 365 40 0.0373 0.0329 0.3000 5.9 7vb8:B, 7vb8:A, 7waq:B, 7waq:A, 7waq:C, 7war:B, 7war:A, 7was:A, 7was:B
25 3o4p:A 314 283 0.2050 0.2102 0.2332 6.3 3byc:A, 1e1a:A, 2gvu:A, 2gvv:A, 2gvw:A, 2gvx:A, 3hlh:A, 3hlh:B, 3hlh:C, 3hlh:D, 3hli:A, 3hli:B, 3hli:C, 3hli:D, 2iao:A, 2iap:A, 2iaq:A, 2iar:A, 2ias:A, 2iat:A, 2iau:A, 2iav:A, 2iaw:A, 2iax:A, 3kgg:A, 3li3:A, 3li4:A, 3li5:A, 1pjx:A
26 7ajt:UA 834 62 0.0497 0.0192 0.2581 8.6 7d5s:B1, 6ke6:B1, 6lqp:B1, 6lqq:B1, 6lqu:B1, 6nd4:O, 7suk:LO, 5wlc:LO, 6zqa:UA, 6zqb:UA, 6zqc:UA
27 6lqs:B1 806 62 0.0497 0.0199 0.2581 9.0 7aju:UA, 7d4i:B1, 7d5t:B1, 7d63:B1, 6lqr:B1, 6lqt:B1, 6lqv:B1, 6zqd:UA, 6zqe:UA, 6zqf:UA

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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