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BioLiP
>protein
QPLCFNCPICDKIFPATEKQIFEDHVFCHSL

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5aaq:A 57 31 1.0000 0.5439 1.0000 1.77e-17 2mxp:A, 4xkl:B, 4xkl:D
2 4z4k:A 282 24 0.3548 0.0390 0.4583 0.82 5aas:A, 4bmj:A, 4bmj:B, 4bmj:D, 4bmj:E, 4bmj:F, 4bmj:G, 4bmj:I, 4bmj:K, 3vht:B, 5yt6:D, 4z4k:B, 4z4m:A, 4z4m:B
3 4z4k:A 282 24 0.3548 0.0390 0.4583 2.7 5aas:A, 4bmj:A, 4bmj:B, 4bmj:D, 4bmj:E, 4bmj:F, 4bmj:G, 4bmj:I, 4bmj:K, 3vht:B, 5yt6:D, 4z4k:B, 4z4m:A, 4z4m:B
4 2m7q:A 69 24 0.3548 0.1594 0.4583 1.1 4bmj:C, 4bmj:H, 4bmj:J, 5yt6:F, 5yt6:B, 5yt6:H
5 2m7q:A 69 24 0.3548 0.1594 0.4583 3.8 4bmj:C, 4bmj:H, 4bmj:J, 5yt6:F, 5yt6:B, 5yt6:H
6 2w3z:A 238 21 0.2903 0.0378 0.4286 1.6
7 6o9l:Q 430 33 0.3548 0.0256 0.3333 1.6 8bvw:W, 8byq:W, 7eg9:U, 7ega:U, 7egb:U, 7egc:U, 7ena:EA, 7enc:EA, 5gpy:A, 8gxq:EA, 8gxs:EA, 5iy6:Q, 5iy8:Q, 5iy9:Q, 5iya:Q, 5iyb:Q, 5iyc:Q, 5iyd:Q, 7lbm:Q, 7nvr:W, 7nvs:W, 7nvt:W, 7nvu:W, 7nvy:W, 7nvz:W, 7nw0:W, 8s51:W, 8s52:W, 8s54:W, 8s55:W, 8s5n:W, 1vd4:A, 8wak:U, 8wal:U, 8wan:U, 8wao:U, 8wap:U, 8waq:U, 8war:U, 8was:U
8 7qb0:A 127 30 0.3548 0.0866 0.3667 2.6
9 1b8t:A 192 27 0.2903 0.0469 0.3333 2.9 1ctl:A
10 1a7i:A 60 27 0.3226 0.1667 0.3704 5.3
11 2oby:A 334 13 0.2258 0.0210 0.5385 6.4 2j8z:A, 2oby:B, 2oby:C, 2oby:D, 2oby:E
12 8fok:1 1046 13 0.2581 0.0076 0.6154 6.8 3flo:B, 3flo:D, 3flo:F, 3flo:H, 4fxd:A, 4fxd:B, 4fyd:A, 4fyd:B
13 5xe0:A 457 21 0.2581 0.0175 0.3810 6.8 5zit:A
14 2o10:A 60 28 0.2581 0.1333 0.2857 7.1
15 6kc0:A 674 12 0.1613 0.0074 0.4167 8.5 6kbd:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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