Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QPKRYKAHLMGTTYVYDFPELFRQASSSQWKNFSADVKLTDDFFISNELIEDENGELTEVEREPGANAIGMVAFKITVKT
PEYPRGRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGF
QYLYLTSEGMETLKKFDKENSVLTERTVINGEERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYHDIFTITLVTCRSV
GIGAYLVRLGQRAIQVEGQPIILTGASALNKVLGREVYTSNLQLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMSYVPAK
RNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETESGFEYGLFDKGSFFETLSGWAKGVVVGRARLGGIPLGVIG
VETRTVENLIPADPANPNSAETLIQQAGQVWFPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSF
IVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPEGTVEIKFRREKLLDTMNRLDDKYRE
LRSQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELEWTEARRFFFWRLRRRLNEE
YLIKRLSHQVGEASRLEKIARIRSWYPASVDHEDDRQVATWIEENYKTLDDKLKGLKL

The query sequence (length=698) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5csl:A 2050 690 0.9685 0.3298 0.9797 0.0
2 5csl:B 2072 694 0.9628 0.3243 0.9683 0.0 5ctb:A, 5ctb:C, 5ctc:A, 5ctc:B, 5ctc:C, 5cte:B, 5cte:C, 3h0s:A, 3k8x:A, 3k8x:B, 3k8x:C, 1od2:A, 1od2:B, 3pgq:A, 3pgq:C, 3tv5:A, 3tv5:B, 3tv5:C, 3tvu:A, 3tvu:B, 3tvu:C, 3tvw:A, 3tvw:B, 3tvw:C, 3tz3:A, 3tz3:B, 3tz3:C, 1w96:A, 1w96:B, 1w96:C, 4wyo:B, 4wyo:C, 4wz8:B, 4wz8:C
3 1uyr:A 698 698 0.9312 0.9312 0.9312 0.0 5ctb:B, 3h0j:A, 3h0j:B, 3h0j:C, 3h0q:A, 3h0q:B, 3h0q:C, 3h0s:B, 3h0s:C, 1od4:C, 3pgq:B, 1uyr:B, 1uys:A, 1uys:B, 1uys:C, 1w2x:A, 1w2x:C, 1w2x:B
4 3ff6:A 750 696 0.5487 0.5107 0.5503 0.0 3ff6:B, 3ff6:C, 3ff6:D, 3tdc:A
5 2x24:B 667 669 0.5258 0.5502 0.5486 0.0 2x24:A
6 1vrg:A 515 375 0.1203 0.1631 0.2240 1.77e-12 1vrg:B, 1vrg:C, 1vrg:D, 1vrg:E, 1vrg:F
7 8sgx:E 489 386 0.1304 0.1861 0.2358 2.66e-12 8sgx:F, 8sgx:G, 8sgx:H, 8sgx:C, 8sgy:C, 8sgy:E, 8sgy:G, 8sgy:D, 8sgz:C, 8sgz:D, 8sgz:E, 8sgz:F, 8sgz:G, 8sgz:H
8 7ybu:P 507 362 0.1132 0.1558 0.2182 3.14e-11 7ybu:G, 7ybu:C, 7ybu:K, 7ybu:E, 7ybu:I
9 8pn7:A 506 374 0.1160 0.1601 0.2166 1.48e-08 8pn7:B, 8pn7:C, 8pn7:D, 8pn7:E, 8pn7:F, 8pn8:A, 8pn8:B, 8pn8:C, 8pn8:D, 8pn8:E, 8pn8:F, 6ybp:A, 6ybp:F, 6ybq:A, 6ybq:C, 6ybq:D, 6ybq:E, 6ybq:F
10 1on3:E 520 353 0.1117 0.1500 0.2210 6.03e-08 1on3:A, 1on3:D, 1on3:B, 1on3:C, 1on3:F, 1on9:A, 1on9:B, 1on9:C, 1on9:D, 1on9:E, 1on9:F
11 3ib9:A 521 353 0.1189 0.1593 0.2351 1.55e-07 3ib9:B, 1xny:A, 1xny:B
12 3ib9:A 521 51 0.0244 0.0326 0.3333 6.4 3ib9:B, 1xny:A, 1xny:B
13 3n6r:B 506 414 0.1203 0.1660 0.2029 5.42e-07 3n6r:D, 3n6r:F, 3n6r:H, 3n6r:J, 3n6r:L
14 2f9i:B 260 85 0.0387 0.1038 0.3176 8.41e-04 2f9i:D, 5kdr:B
15 8rth:F 542 60 0.0272 0.0351 0.3167 0.034 8rth:B, 8rth:D, 8rth:L, 8rth:H, 8rth:J
16 8j4z:J 541 278 0.0946 0.1220 0.2374 0.050 8j4z:H, 8j4z:A, 8j4z:K, 8j4z:C, 8j4z:F, 8j78:J, 8j78:F, 8j78:D, 8j7d:C, 8j7d:G, 8j7d:J, 8j7d:E, 8jaw:B, 8jaw:D, 8jaw:I, 8jaw:G, 8jaw:J, 8jaw:L, 8jxl:B, 8jxl:A, 8jxl:D, 8jxl:K, 8jxl:G, 8jxl:I, 8jxm:K, 8jxm:A, 8jxm:E, 8jxm:J, 8jxn:K, 8jxn:G, 8jxn:I, 8jxn:A, 8k2v:H, 8k2v:I, 8k2v:J, 8k2v:G, 8k2v:K, 8k2v:L
17 8j4z:J 541 59 0.0244 0.0314 0.2881 2.2 8j4z:H, 8j4z:A, 8j4z:K, 8j4z:C, 8j4z:F, 8j78:J, 8j78:F, 8j78:D, 8j7d:C, 8j7d:G, 8j7d:J, 8j7d:E, 8jaw:B, 8jaw:D, 8jaw:I, 8jaw:G, 8jaw:J, 8jaw:L, 8jxl:B, 8jxl:A, 8jxl:D, 8jxl:K, 8jxl:G, 8jxl:I, 8jxm:K, 8jxm:A, 8jxm:E, 8jxm:J, 8jxn:K, 8jxn:G, 8jxn:I, 8jxn:A, 8k2v:H, 8k2v:I, 8k2v:J, 8k2v:G, 8k2v:K, 8k2v:L
18 6cu5:A 314 93 0.0387 0.0860 0.2903 0.055 6cu5:B, 8ft7:A, 8ft7:B
19 3gma:B 566 144 0.0516 0.0636 0.2500 0.25 3gf3:A, 3glm:A, 3glm:C, 3glm:B, 3glm:D, 3gma:A
20 8f3d:A 566 59 0.0244 0.0300 0.2881 0.54 8f3d:B, 8f3d:C, 8f3d:D, 8f3d:E, 8f3d:F, 8f41:B, 8f41:D, 8f41:F, 8f41:A, 8f41:C, 8f41:E
21 4g2r:B 441 266 0.0759 0.1202 0.1992 0.57 4g2r:A, 6p7u:A, 6p7u:B, 6p7u:D, 6pk2:A, 6pk2:B, 6pk2:D, 6pk2:E, 6pk2:F, 6pk2:H, 6prw:A, 6prw:B, 6prw:D, 6prw:E, 6prw:F, 6prw:H, 6tzv:A, 6tzv:B, 6tzv:D, 6tzv:E, 6tzv:F, 6tzv:H
22 1uf9:B 191 44 0.0258 0.0942 0.4091 1.9 1uf9:C
23 8jxm:C 520 59 0.0244 0.0327 0.2881 2.1 8j99:B, 8j99:D, 8j99:J, 8j99:G, 8j99:H, 8j99:L, 8jxm:H, 8jxn:D, 8jxn:B
24 6p7u:C 410 265 0.0716 0.1220 0.1887 2.5 6pk2:C, 6pk2:G, 6prw:C, 6prw:G, 6tzv:C, 6tzv:G
25 3u9s:F 537 59 0.0244 0.0317 0.2881 2.8 3u9s:B, 3u9s:L, 3u9s:D, 3u9s:H, 3u9s:J
26 5ini:F 511 51 0.0258 0.0352 0.3529 3.3 5inf:B, 5inf:F, 5ini:A, 5ini:D, 5ini:B, 5ini:C, 5ini:E
27 7bkb:H 438 82 0.0301 0.0479 0.2561 6.9 7bkb:h, 7bkc:H, 7bkc:h
28 6xzd:CP1 772 38 0.0186 0.0168 0.3421 8.9
29 7ax0:A 317 72 0.0229 0.0505 0.2222 9.9 7ax2:A
30 7ax0:A 317 72 0.0229 0.0505 0.2222 9.9 7ax2:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218