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BioLiP
>protein
QPKPGFCVKTNSSEGKVFINICHSPSIPPPADGFRIPMSLGEPHAELDAKGQGCTAYDVAVNSNFYLRMQNSDFLRELVV
TIAREGLEDKYGLQLNPEWRMLKYRSFLGSIS

The query sequence (length=112) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4cse:B 112 112 1.0000 1.0000 1.0000 1.40e-82 4cse:A
2 4cv4:A 133 127 1.0000 0.8421 0.8819 3.11e-79 4ckt:A, 4ckt:B
3 4psi:A 125 111 0.8750 0.7840 0.8829 5.23e-71 4psi:B
4 8aw3:3 279 56 0.1607 0.0645 0.3214 0.95
5 4uc0:A 247 82 0.1607 0.0729 0.2195 3.3
6 2yxx:A 385 53 0.1696 0.0494 0.3585 6.1
7 7d50:B 255 32 0.1161 0.0510 0.4062 6.3 7d4r:A, 7d50:A, 7d53:A, 7d53:B, 7d53:C, 7d53:D
8 4zgf:A 141 95 0.2589 0.2057 0.3053 7.2
9 6f2f:A 166 72 0.1964 0.1325 0.3056 9.2 6f2f:B, 6f2f:C, 6f2h:A, 6f2h:B, 6f2h:E, 6f2h:F, 6f2h:G, 6f2h:I, 6f2h:J, 6f2h:K, 6f2h:L, 6hf6:A, 6hf6:B, 6hf6:C
10 5z0q:C 379 23 0.0714 0.0211 0.3478 9.7 5z0q:A, 5z0q:B, 5z0q:D, 5z0q:E, 5z0q:F, 5z0q:G, 5z0q:H, 5z0q:I, 5z0q:J, 5z0q:K, 5z0q:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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