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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QPFHSPEESVNSQFYLPPPPGNDDPAFRYDKEAYFKGYAIKGSPRWKQAAEDADISVENIARIFSPVVGAKISPKDTPET
WNMLQNLLKVGGYYATASAKKYYMRTRPFVLFNHSTCRPEDENTLRKDGSYPSGHTAYSTLLALVLSQARPERAQELARR
GWEFGQSRVICGAHWQSDVDAGRYVGAVEFARLQTIPAFQKSLAKVREELNDKNNLL

The query sequence (length=217) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2a96:B 219 217 1.0000 0.9909 1.0000 1.99e-165 2a96:A, 2a96:C, 2a96:D, 2akc:A, 2akc:B, 2akc:C, 2akc:D
2 1d2t:A 222 203 0.4424 0.4324 0.4729 1.16e-61 1eoi:A, 1eoi:B, 1eoi:C
3 4i2y:A 381 68 0.1060 0.0604 0.3382 0.21 4i2y:B
4 7el9:A 1731 49 0.0599 0.0075 0.2653 0.84 7el9:D, 7elc:A
5 5uao:A 519 68 0.1014 0.0424 0.3235 1.7 5uao:D
6 8a3l:o 114 89 0.1198 0.2281 0.2921 2.1 7abz:P, 7ac7:P, 7acj:P, 7acr:P, 5ady:P, 5afi:P, 5aka:P, 8akn:o, 8am9:o, 8ana:o, 8ap4:o, 9ax7:o, 9ax8:P, 8aye:o, 8b0x:o, 7b5k:P, 8b7y:X, 3bbx:P, 8bf7:M, 8bge:M, 8bgh:M, 8bh4:M, 8bhj:M, 8bhl:M, 8bhn:M, 8bhp:M, 8bil:M, 8bim:M, 7bl2:P, 7bl3:P, 7bl4:P, 7bl5:P, 7bl6:P, 6bu8:18, 7bv8:Q, 6by1:CP, 6by1:DP, 6c4i:Q, 8c8x:P, 8c8y:P, 8c8z:P, 8c90:P, 8c91:P, 8c92:P, 8c93:P, 8c94:P, 8c96:P, 8c97:P, 8cam:o, 8ceu:o, 8cgd:o, 8cgk:o, 8cgv:o, 9cg5:o, 9cg6:o, 9cg7:o, 7cpj:P, 4csu:P, 7d6z:P, 7d80:o, 6dnc:T, 8eiu:o, 8ekc:R, 8emm:o, 6enf:P, 6enj:P, 6enu:P, 9fbv:o, 8fiz:BW, 8fto:o, 8fzd:R, 8fze:R, 8fzf:R, 8fzg:R, 8fzh:R, 8fzi:R, 8fzj:R, 8g2u:P, 8g31:P, 8g34:P, 8g38:P, 8g6w:o, 8g6x:o, 8g6y:o, 8g7p:R, 8g7q:R, 8g7r:R, 8g7s:R, 5gad:Q, 5gae:Q, 5gaf:Q, 5gag:Q, 5gah:Q, 6gbz:P, 6gc0:P, 6gc4:P, 6gc6:P, 6gc7:P, 6gc8:P, 6gwt:P, 6gxm:P, 6gxn:P, 6gxo:P, 6gxp:P, 6h4n:P, 5h5u:Q, 6h58:P, 6h58:PP, 6hrm:P, 8hsp:o, 8htz:o, 8hu1:o, 6i0y:P, 6i7v:DQ, 6i7v:CQ, 8ifb:o, 8ifc:o, 5iqr:P, 5it8:DQ, 5it8:CQ, 8j1z:o, 2j28:P, 3j5l:P, 5j5b:DQ, 5j5b:CQ, 3j7z:P, 5j7l:DQ, 5j7l:CQ, 3j8g:P, 5j88:DQ, 5j88:CQ, 5j8a:DQ, 5j8a:CQ, 3j9y:P, 3j9z:LM, 5j91:DQ, 5j91:CQ, 3ja1:LR, 3jbu:p, 3jbv:p, 3jcd:P, 3jce:P, 3jcj:O, 3jcn:P, 5jc9:DQ, 5jc9:CQ, 7jss:p, 7jsw:p, 7jsz:p, 5jte:BP, 7jt1:p, 7jt2:p, 7jt3:p, 5ju8:BP, 7k00:o, 7k50:p, 7k51:p, 7k52:p, 7k53:p, 7k54:p, 7k55:p, 5kcr:1T, 5kcs:1T, 8kie:o, 5kps:P, 5kpv:O, 5kpw:O, 5kpx:O, 5l3p:T, 6lkq:6, 7lv0:p, 7lvk:X, 5lza:P, 5lzb:P, 5lzc:P, 5lzd:P, 5lze:P, 5lzf:P, 7m5d:P, 5mdv:P, 5mdw:P, 5mdy:P, 5mdz:P, 5mgp:P, 7n1p:LS, 7n2c:LS, 7n2u:LS, 7n2v:LS, 7n30:LS, 7n31:LS, 7nbu:o, 5nco:Q, 5np6:n, 7nso:P, 7nsp:P, 7nsq:P, 5nwy:c, 7nwt:P, 7nww:O, 7o19:BP, 7o1a:BP, 7o1c:BP, 5o2r:P, 6o9j:P, 6o9k:P, 7ode:X, 6ofx:p, 6og7:p, 6ogf:p, 6ogg:p, 6ogi:p, 7oif:O, 7oig:O, 7oii:O, 7oiz:o, 7oj0:o, 6om6:P, 6ore:P, 6orl:P, 6osk:P, 6osq:P, 6ost:P, 6ot3:P, 7ot5:O, 7otc:P, 6ouo:P, 8p16:P, 8p17:P, 8p18:P, 7p3k:o, 8peg:s, 8phj:o, 6pj6:X, 7pjs:P, 7pjt:P, 7pju:P, 7pjv:P, 7pjw:P, 7pjx:P, 7pjy:P, 7pjz:P, 8pkl:s, 8pva:o, 7q4k:BP, 8q4f:o, 6q97:P, 6q98:P, 6q9a:P, 8qbt:P, 6qdw:p, 7qg8:c, 7qgh:c, 7qgn:c, 7qgr:c, 8qk7:P, 8qoa:o, 7qq3:X, 6qul:Q, 8r6c:o, 8r8m:o, 8rpy:P, 8rpz:P, 8rq0:P, 8rq2:P, 6s0k:Q, 7s1g:X, 7s1h:X, 7s1i:X, 7s1j:X, 7s1k:X, 7sa4:P, 7ss9:p, 7ssd:p, 7ssl:p, 7ssn:p, 7sso:p, 7ssw:p, 7st2:p, 7st6:p, 7st7:p, 8syl:R, 6szs:P, 8t5d:P, 8t5h:P, 6tbv:L191, 6tc3:L191, 7tos:L19, 4u1u:BP, 4u1u:DP, 4u1v:BP, 4u1v:DP, 4u20:BP, 4u20:DP, 4u24:BP, 4u24:DP, 4u25:BP, 4u25:DP, 4u26:BP, 4u26:DP, 4u27:BP, 4u27:DP, 5u4i:Q, 6u48:CQ, 5u9f:18, 5u9g:18, 7ug7:LS, 7uph:o, 8upo:y, 8upr:y, 8uql:y, 8uqm:y, 8uqp:y, 8ur0:y, 8urh:y, 8uri:y, 8urx:y, 8ury:y, 4uy8:P, 5uyk:18, 5uyl:18, 5uym:18, 5uyn:18, 5uyp:18, 5uyq:18, 4v4h:BP, 4v4h:DP, 4v4q:BP, 4v4q:DP, 4v4v:BN, 4v4w:BN, 4v50:BP, 4v50:DP, 4v52:BP, 4v52:DP, 4v53:BP, 4v53:DP, 4v54:BP, 4v54:DP, 4v55:BP, 4v55:DP, 4v56:BP, 4v56:DP, 4v57:BP, 4v57:DP, 4v5b:AP, 4v5b:CP, 4v5h:BP, 4v5y:BP, 4v5y:DP, 4v64:BP, 4v64:DP, 4v65:BI, 4v66:BI, 4v69:BP, 4v6c:BP, 4v6c:DP, 4v6d:BP, 4v6d:DP, 4v6e:BP, 4v6e:DP, 4v6k:AQ, 4v6l:BQ, 4v6m:BP, 4v6n:AR, 4v6o:BR, 4v6p:BR, 4v6q:BR, 4v6r:BR, 4v6s:AR, 4v6t:BP, 4v6v:BT, 4v6y:BP, 4v6z:BP, 4v70:BP, 4v71:BP, 4v72:BP, 4v73:BP, 4v74:BP, 4v75:BP, 4v76:BP, 4v77:BP, 4v78:BP, 4v79:BP, 4v7a:BP, 4v7b:BP, 4v7c:BR, 4v7d:AS, 4v7i:AP, 4v7s:BP, 4v7s:DP, 4v7t:BP, 4v7t:DP, 4v7u:BP, 4v7u:DP, 4v7v:BP, 4v7v:DP, 4v85:BT, 4v89:BT, 4v9c:BP, 4v9c:DP, 4v9d:CP, 4v9d:DP, 4v9o:AP, 4v9o:CP, 4v9o:EP, 4v9o:GP, 4v9p:AP, 4v9p:CP, 4v9p:EP, 4v9p:GP, 8vs9:L19, 8vsa:L19, 6vu3:y, 6vwl:N, 6vwm:N, 6vwn:N, 6vyq:y, 6vyr:y, 6vys:y, 6vyt:y, 6vyu:y, 6vyw:y, 6vyx:y, 6vyy:y, 6vyz:y, 6vz2:y, 6vz3:y, 6vz5:y, 6vz7:y, 6vzj:y, 8w51:Q, 5wdt:P, 6wd0:p, 6wd1:p, 6wd2:p, 6wd3:p, 6wd4:p, 6wd5:p, 6wd6:p, 6wd7:p, 6wd8:p, 6wd9:p, 6wda:p, 6wdb:p, 6wdc:p, 6wdd:p, 6wde:p, 6wdf:p, 6wdg:p, 6wdh:p, 6wdi:p, 6wdj:p, 6wdk:p, 6wdl:p, 6wdm:p, 5we4:P, 5we6:P, 4wf1:BP, 4wf1:DP, 5wf0:P, 5wfk:P, 5wfs:P, 6wnt:p, 6wnv:p, 6wnw:p, 4woi:BP, 4woi:CP, 4www:RP, 4www:YP, 6x6t:y, 6x7f:y, 6x7k:y, 6x9q:y, 6xdq:y, 6xdr:y, 6xgf:y, 6xii:y, 6xij:y, 6xz7:P, 6xza:P2, 6xzb:P2, 6y69:P, 7y7c:o, 7y7d:o, 7y7e:o, 7y7f:o, 7y7g:o, 7y7h:o, 4ybb:DQ, 4ybb:CQ, 7yla:X, 6ys3:p, 6ysr:P, 6yss:P, 6yst:P, 6ysu:P, 7z20:p, 7zod:p, 7zp8:p, 7zq5:p, 7zq6:p, 6ztj:BQ, 6ztl:BQ, 6ztm:BQ, 6ztn:BQ, 6zto:BQ, 6ztp:BQ, 7zta:L191, 6zu1:BQ
7 6tnn:I 134 72 0.0876 0.1418 0.2639 5.9 6tnn:H
8 5jwy:A 259 61 0.0829 0.0695 0.2951 8.3 8bm3:A, 8bm3:B, 8bm3:C, 8bm3:D
9 7elb:A 1937 49 0.0599 0.0067 0.2653 9.7 7ckm:A, 7elb:C, 6kld:A, 6kle:A, 6klh:A, 6klh:C
10 7uy4:A 258 40 0.0691 0.0581 0.3750 10.0 7uy4:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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