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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QPEPRTRRRAYLWCKEFLPGAWRGLREDEFHISVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAEAMVLESVMFA
ILAERSLGPKLYGIFPQGRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKF
TEESRIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYRGFDIGN
HFCEWMYDYSYEKYPFFRANIRKYPTKKQQLHFISSYLPAFQNDFENLSTEEKSIIKEEMLLEVNRFALASHFLWGLWSI
VQAKISSIEFGYMDYAQARFDAYFHQKRKLGV

The query sequence (length=352) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8bi5:A 355 354 1.0000 0.9915 0.9944 0.0 7a04:A, 7a04:B, 7a06:A, 5afv:A, 5afv:B, 8bi5:B, 8bi6:A, 8bi6:B, 4br3:A, 4br3:B, 4cg8:A, 4cg9:A, 4cga:A, 2ckq:A, 2ckq:B, 4da5:A, 4da5:B, 5eqe:A, 5eqe:B, 5eqp:A, 5eqp:B, 5eqy:A, 5eqy:B, 3f2r:A, 3f2r:B, 5ftg:A, 5fut:A, 3g15:A, 3g15:B, 7nb1:AAA, 7nb1:BBB, 7nb2:AAA, 7nb2:BBB, 7nb3:AAA, 7nb3:BBB, 5w6o:A, 5w6o:B, 3zm9:A, 3zm9:B
2 2ckp:A 316 348 0.8977 1.0000 0.9080 0.0
3 3lq3:A 339 348 0.6051 0.6283 0.6121 1.01e-151 3feg:A
4 1nw1:A 365 358 0.4205 0.4055 0.4134 6.68e-91 1nw1:B
5 3mes:B 358 361 0.3295 0.3240 0.3213 7.22e-47 3mes:A
6 6yxs:A 359 349 0.2926 0.2869 0.2951 2.41e-41 3fi8:A, 6yxt:A
7 3c5i:D 355 351 0.3040 0.3014 0.3048 8.27e-39 3c5i:C, 3c5i:A, 3c5i:B
8 2ihn:A 299 44 0.0511 0.0602 0.4091 1.1
9 3dxp:A 329 224 0.1335 0.1429 0.2098 1.8
10 2pyw:A 417 66 0.0511 0.0432 0.2727 3.7 2pyw:B
11 6vno:A 1084 76 0.0597 0.0194 0.2763 4.1 6vp6:A
12 1md9:A 536 118 0.0824 0.0541 0.2458 4.5 1mdb:A
13 8btk:Bf 110 25 0.0284 0.0909 0.4000 5.0 7a01:x2, 8a3d:Z, 5aj0:Af, 8b5l:f, 8b6c:f, 9bdl:AL33, 9bdn:AL33, 9bdp:AL33, 7bhp:Lf, 8bhf:S1, 8bpo:e2, 7cpu:Lf, 7cpv:Lf, 4d5y:f, 4d67:f, 6d90:f, 6d9j:f, 9f1b:Bf, 9f1c:Bf, 9f1d:Bf, 7f5s:Lf, 8fkp:LT, 8fkq:LT, 8fkr:LT, 8fks:LT, 8fkt:LT, 8fku:LT, 8fkv:LT, 8fkw:LT, 8fkx:LT, 8fky:LT, 8fkz:LT, 8fl0:LT, 8fl2:LT, 8fl3:LT, 8fl4:LT, 8fl6:LT, 8fl7:LT, 8fl9:LT, 8fla:LT, 8flb:LT, 8flc:LT, 8fld:LT, 8fle:LT, 8flf:LT, 6frk:f, 6ftg:f, 6fti:f, 6ftj:f, 8g5y:Lf, 8g5z:Lf, 8g60:Lf, 8g61:Lf, 8g6j:Lf, 8glp:Lf, 6gz3:Af, 6gz4:Af, 6gz5:Af, 6hcf:f3, 6hcj:f3, 6hcm:f3, 6hcq:f3, 8idt:n, 8idy:n, 8ie3:n, 8ifd:2Z, 8ife:2Z, 8ine:n, 8inf:n, 8ink:n, 6ip5:2Z, 6ip6:2Z, 6ip8:2Z, 8ipd:n, 8ipx:n, 8ipy:n, 8ir1:n, 8ir3:n, 3j7o:f, 3j7p:f, 3j7q:f, 3j7r:f, 3j92:f, 3jag:f, 3jah:f, 3jai:f, 3jaj:f, 3jan:f, 8jdj:k, 8jdk:k, 8jdl:k, 8jdm:k, 8k2c:Lf, 5lks:Lf, 6lqm:u, 6lsr:u, 6lss:n, 7ls1:Z2, 7ls2:Z2, 6lu8:n, 5lzs:f, 5lzt:f, 5lzu:f, 5lzv:f, 5lzw:f, 5lzx:f, 5lzy:f, 5lzz:f, 7mdz:f, 6mtb:f, 6mtc:f, 6mtd:f, 6mte:f, 7nfx:f, 7nwg:f3, 7nwh:f, 7nwi:f, 7o7y:Bf, 7o7z:Bf, 7o80:Bf, 7o81:Bf, 7obr:f, 8ohd:Lf, 8oj0:Lf, 8oj5:Lf, 8oj8:Lf, 6ole:g, 6olf:g, 6olg:Af, 6oli:g, 6olz:Af, 6om0:g, 6om7:g, 7ow7:Z, 7oyc:f1, 7oyd:f, 8p2k:Bf, 6p5i:Af, 6p5j:Af, 6p5k:Af, 6p5n:Af, 8q7z:Bf, 8q87:Bf, 8qfd:f, 7qgg:g, 8qoi:Lf, 7qvp:Lf, 7qvp:Mf, 7qwq:f, 7qwr:f, 7qws:f, 6qzp:Lf, 6r5q:f, 6r6g:f, 6r6p:f, 6r7q:f, 8rjb:f, 8rjc:f, 8rjd:f, 8scb:f, 6sgc:f2, 6swa:d, 5t2c:Z, 6t59:f3, 7tm3:f, 7toq:AL33, 7tor:AL33, 7tut:f, 7ucj:f, 7uck:f, 4ug0:Lf, 4ujc:Bf, 4ujd:Af, 4uje:Cf, 4v6x:Cf, 6w6l:g, 6xa1:Lf, 7xnx:Lf, 7xny:Lf, 8xsx:Lf, 8xsy:Lf, 8xsz:Lf, 6y0g:Lf, 8y0w:Lf, 8y0x:Lf, 6y2l:Lf, 6y57:Lf, 6y6x:Lf, 8yoo:Lf, 8yop:Lf, 6z6l:Lf, 6z6m:Lf, 6z6n:Lf, 7zjw:Li, 7zjx:Li, 6zm7:Lf, 6zme:Lf, 6zmi:Lf, 6zmo:Lf, 6zvk:x2
14 5iit:C 357 111 0.0824 0.0812 0.2613 5.5 3iid:A, 3iif:A, 3iif:B, 3iif:C, 5iit:B
15 8g5w:A 328 80 0.0625 0.0671 0.2750 6.1 8g5w:B, 8g5w:C, 8g5x:A, 8g5x:B, 8g5x:C, 7js3:A, 7js3:B, 7js3:C, 7txa:A, 7txa:B, 7txa:C, 7txa:D, 7txa:Q, 7txa:U, 7txa:W, 7txa:1, 7txg:A, 7txg:B, 7txg:C, 7txg:D
16 8sm6:D 354 81 0.0597 0.0593 0.2593 6.2 8sm6:A, 8sm6:B, 8sm6:C, 8sma:A, 8sma:B, 8sma:G, 8sma:J
17 7xrl:D 554 69 0.0597 0.0379 0.3043 9.3 3auj:A, 3auj:L, 1dio:A, 1dio:L, 1eex:A, 1eex:L, 1egm:A, 1egm:L, 1egv:A, 1egv:L, 1iwb:A, 1iwb:L, 1uc4:A, 1uc4:L, 1uc5:A, 1uc5:L, 7xrk:A, 7xrk:D, 7xrl:A, 5yrt:A, 5yrt:D, 5yrt:G, 5yrt:J, 5yrv:A, 5yrv:D, 5yrv:G, 5yrv:J, 5ysh:A, 5ysh:D, 5ysh:G, 5ysh:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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