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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QPEKATYQVVQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGVEVGLAHGYLLVGPFALTGPLRSTPVHG
QAGALGAAGLVAILSVCLTMYGVASFNEGDPSTAPSLTLTGRKKEADKLQTSDGWAKFTGGFFFGGISGVLWAYFLLYVL
DLPYFF

The query sequence (length=166) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5zji:L 166 166 1.0000 1.0000 1.0000 1.33e-118 8bcv:L, 8bcw:L, 7ew6:L, 7ewk:L, 7f9o:L, 7f9o:o
2 8htu:L 163 158 0.7410 0.7546 0.7785 1.35e-91 7ksq:L, 7kux:L, 6l35:L, 7xqp:L
3 8wgh:L 162 160 0.8072 0.8272 0.8375 8.25e-90
4 4rku:L 163 162 0.8133 0.8282 0.8333 2.93e-82 7dkz:L, 8j6z:L, 8j7a:L, 8j7b:L, 5l8r:L, 3lw5:L, 7wfe:BL, 7wg5:BL, 4xk8:L, 4xk8:l, 4y28:L, 6yac:L, 6yez:L, 6zoo:L, 6zxs:L
5 2o01:L 164 163 0.7771 0.7866 0.7914 8.91e-79 7wfd:AL, 7wg5:AL, 2wsc:L, 2wse:L, 2wsf:L
6 7yca:L 158 158 0.5663 0.5949 0.5949 7.84e-58
7 7d0j:L 159 159 0.5482 0.5723 0.5723 1.45e-56 7bgi:L, 7blx:L, 7dz7:L, 7dz8:L, 8h2u:L, 7zq9:L, 7zqc:L, 7zqd:L, 7zqd:L2
8 6zzx:L 157 159 0.5663 0.5987 0.5912 1.79e-56 6zzy:L
9 6sl5:L 155 152 0.5301 0.5677 0.5789 1.84e-55
10 6igz:L 155 150 0.5301 0.5677 0.5867 7.98e-54
11 7a4p:L 140 159 0.5482 0.6500 0.5723 4.54e-52
12 7y7b:L 150 150 0.4398 0.4867 0.4867 2.07e-45 7y8a:L
13 8wm6:L 151 150 0.4337 0.4768 0.4800 1.71e-43 8wmj:L, 8wmv:L, 8wmw:L
14 7y5e:LN 140 150 0.4277 0.5071 0.4733 1.96e-43 7y5e:L2, 7y7a:L7, 7y7a:Lo
15 5oy0:L 157 155 0.4157 0.4395 0.4452 5.97e-43 8am5:l, 8asl:l, 8asp:l, 6hqb:L, 4l6v:L, 4l6v:l, 4l6v:8, 6nwa:L, 6nwa:U, 6nwa:l, 5oy0:l, 5oy0:0, 7umh:L, 7umh:U, 7umh:l, 6uzv:L, 6uzv:0, 6uzv:l
16 7fix:L1 152 150 0.3976 0.4342 0.4400 9.32e-42 4fe1:L, 7fix:L2, 7fix:L3, 1jb0:L, 6k33:aL, 6k33:bL, 6k33:cL, 6lu1:L, 7m75:L, 7m76:L, 7m78:L, 3pcq:L, 6pfy:L, 6pfy:h, 6pfy:U, 6pgk:L, 6pgk:h, 6pgk:U, 6tra:L, 6trc:L, 6trc:l, 6trc:0, 6trd:L, 6trd:l, 6trd:0, 5zf0:L1, 5zf0:L2, 5zf0:L3, 5zf0:L4, 5zf0:L6, 5zf0:L5
17 6jo5:L 118 136 0.4398 0.6186 0.5368 5.21e-41 6ijj:L, 6ijo:L, 6jo6:L, 7zq9:L2
18 6tcl:L2 167 160 0.4277 0.4251 0.4437 1.50e-39 6jeo:aL, 6jeo:bL, 6jeo:cL, 6jeo:dL, 6k61:L, 6k61:l, 6tcl:L1, 6tcl:LL, 6tcl:L
19 6fos:L 140 148 0.3855 0.4571 0.4324 4.59e-39 7blz:L, 5zgb:L, 5zgh:L
20 8cmo:L 123 134 0.4337 0.5854 0.5373 1.98e-38
21 7qco:L 150 151 0.4096 0.4533 0.4503 3.09e-38 7qco:S, 7qco:s, 7qco:l
22 6kif:L 164 157 0.4217 0.4268 0.4459 2.27e-36 6kif:n, 6kif:V, 6kig:L, 6kig:n, 6kig:V
23 6kmx:aL 172 152 0.3795 0.3663 0.4145 2.05e-33 6kmx:bL, 6kmx:cL
24 7lx0:U 163 156 0.3494 0.3558 0.3718 3.00e-33 7lx0:L, 7lx0:l, 6pnj:L, 6pnj:U, 6pnj:l
25 6ly5:l 144 152 0.3976 0.4583 0.4342 2.22e-32
26 7dr0:L 131 139 0.3614 0.4580 0.4317 6.71e-32 7dr1:L, 7dr2:aL, 7dr2:bL, 7dr2:cL, 7dr2:dL
27 6l4u:L 137 150 0.3916 0.4745 0.4333 1.70e-30
28 7y3f:1 466 141 0.3554 0.1266 0.4184 3.88e-30
29 6vpv:L 160 142 0.3976 0.4125 0.4648 5.35e-30 6vpv:l, 6vpv:0
30 8wey:L 121 134 0.3193 0.4380 0.3955 8.66e-30
31 7coy:aL 147 146 0.3554 0.4014 0.4041 3.88e-29 7coy:cL, 7coy:bL, 7dwq:L
32 7s3d:L 170 158 0.3494 0.3412 0.3671 8.90e-28 7s3d:l, 7s3d:U
33 6kmw:aL 144 142 0.3434 0.3958 0.4014 6.43e-27 6kmw:cL, 6kmw:bL
34 7f4v:aL 129 91 0.2410 0.3101 0.4396 1.53e-18 7f4v:cL, 7f4v:bL
35 8jze:l 250 95 0.2289 0.1520 0.4000 1.00e-14 8jzf:l
36 8jjr:l 253 153 0.2771 0.1818 0.3007 2.18e-14
37 8jw0:l 253 137 0.2410 0.1581 0.2920 2.51e-14
38 7aor:aa 1558 51 0.1205 0.0128 0.3922 0.16
39 8p5d:SI0 167 63 0.1325 0.1317 0.3492 3.7 8p60:SI0, 8p60:RI0, 7qca:SI0
40 8svc:A 270 30 0.0783 0.0481 0.4333 7.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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