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BioLiP
>protein
QPAAIEAFINSPEFQKNIRMRDIEKNKIGSGSGTVYRLHDDFVVKIPVNEGIRNSHPDRVSKYLNMANDDKNFSRSAIMN
INGKDVTVLVSKYIQGQEFDVEDEDNYRMAEALLKSRGVYMHDINLGNILVKEGVLFFVDGDQIVLSQE

The query sequence (length=149) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8jbi:C 157 157 1.0000 0.9490 0.9490 8.54e-100 8jbi:D, 8jbi:A, 8jbi:B
2 2ct8:A 465 68 0.1275 0.0409 0.2794 1.3 2csx:A, 2csx:B, 2ct8:B
3 8wgo:A 869 33 0.1074 0.0184 0.4848 1.8 8w7j:A, 8wgo:B
4 8w7a:B 804 33 0.1074 0.0199 0.4848 1.9
5 4gf3:A 123 39 0.0872 0.1057 0.3333 4.2 1ttw:A
6 7rpx:E 590 34 0.1141 0.0288 0.5000 6.5 2hix:A, 7rpo:E, 7rpw:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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