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BioLiP
>protein
QNQPHTEVGTARPCRSCKWQTPDPTDPHRGQCTANRHAMGGVWKRWLRDVENTTCSRHEEGKLSFRDHV

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5bwe:B 69 69 1.0000 1.0000 1.0000 2.83e-48 5bwe:F, 4pkf:B
2 3c25:A 354 26 0.1594 0.0311 0.4231 1.8 3bvq:A, 3bvq:B, 3c25:B
3 6s9f:B 300 27 0.1884 0.0433 0.4815 3.6 6s9f:A
4 4mpg:B 252 26 0.1739 0.0476 0.4615 5.9 1ljr:A, 1ljr:B, 3ljr:A, 3ljr:B, 4mpg:A
5 2ghf:A 102 22 0.1304 0.0882 0.4091 6.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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