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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QNETAKRELEEYIADKKAEINPRYRPHYHISPPVGWMNAPNGFSYYKGKFHLFYQFYPYDSVWGPMHWGHVSSSNLIDWE
HLPTALIPETEMCFSGGAVVHGDDLVLLYTGRVTTDTDPFYNETQYLAFSNDGVNFRKYEGNPVLSYVPDNSADFRDPKI
WKFKDHWYVVIGSSSNKQGRVLLYRSGDLFNWEFLSVLGESDGDMGYMWECPDLFELGGKTIFLWSPQGLEPKGDRYKNT
YQTGYYIGELDYETFEFKTDKYFQELDYGHDFYATQTIQGDGKTYLIGWFNMWEVPHLEEEDGWAGTTTLVRELQLIGTR
ITMNPLEGIQDLRTDSVHNGDLEPQQAIEFGPTAEIILQGCLDQKIELLIQGKEGGLVTTVTWDPEVGKVIVNRSGEVRQ
VEWVPIGKTSWRLFLDASSLELFCGEGEVVFSSRIFSDGDWVVKNSSPQTLSVEAYRLRRSVPA

The query sequence (length=464) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7bwc:A 464 464 1.0000 1.0000 1.0000 0.0
2 7vcp:A 490 457 0.3491 0.3306 0.3545 9.96e-87
3 3pij:B 526 490 0.3405 0.3004 0.3224 1.26e-69 3pij:A
4 1w2t:A 432 450 0.3190 0.3426 0.3289 1.66e-64 1w2t:B, 1w2t:C, 1w2t:D, 1w2t:E, 1w2t:F
5 6nun:A 516 478 0.3233 0.2907 0.3138 2.22e-64
6 6nu8:A 488 443 0.2780 0.2643 0.2912 2.30e-52
7 2ac1:A 537 408 0.2716 0.2346 0.3088 1.72e-37 2oxb:A, 2qqu:A, 2qqv:A, 2qqw:A, 2xqr:A, 2xqr:C, 2xqr:G, 2xqr:K, 2xqr:E, 2xqr:I
8 1y9g:A 517 491 0.2888 0.2592 0.2729 7.52e-35
9 2add:A 537 429 0.2780 0.2402 0.3007 5.10e-34 2ade:A, 2aey:A, 2aez:A
10 6s1t:A 512 339 0.2284 0.2070 0.3127 2.25e-32 3kf3:A, 3kf3:B, 6s1t:B, 6s2b:A, 6s2b:B, 3u14:A, 3u14:B, 3u75:A, 3u75:B, 3u75:C, 3u75:D
11 8beq:A 534 294 0.2026 0.1760 0.3197 5.72e-31 8beq:B, 8bes:A, 8bes:B, 8bes:C, 8bes:D, 8bet:A, 8bet:B, 8bet:C, 8bet:D, 8beu:A, 8beu:B, 8beu:C, 8beu:D
12 3rwk:X 493 479 0.2780 0.2617 0.2693 9.54e-31 3sc7:X
13 3ugg:A 524 345 0.2284 0.2023 0.3072 2.37e-30 3ugg:B, 3ugh:B
14 4ffg:A 480 319 0.2026 0.1958 0.2947 6.85e-16 4ffg:B, 4ffg:C, 4ffg:D, 4ffh:A, 4ffh:B, 4ffh:C, 4ffh:D, 4ffi:A, 4ffi:B, 4ffi:C, 4ffi:D
15 5fix:A 624 253 0.1401 0.1042 0.2569 1.82e-08 5fix:B, 6fje:B, 6fje:A, 6fjg:A, 6fjg:B, 5fk7:A, 5fk7:B, 5fk8:A, 5fk8:B, 5fkb:A, 5fkb:B, 5fkc:A, 5fkc:B, 5fmb:A, 5fmb:B, 5fmc:A, 5fmc:B, 5fmd:A, 5fmd:B, 5nsl:A, 5nsl:B, 5o47:B, 5o47:A, 6s2g:A, 6s2g:B, 6s2h:A, 6s2h:B, 6s3z:A, 6s3z:B, 6s82:A, 6s82:B
16 8aa2:E 497 240 0.1250 0.1167 0.2417 1.90e-04 8aa2:M, 6r3r:A, 6r3u:A, 7znr:A, 7znr:B, 7zns:A, 7zns:B
17 7fir:C 304 134 0.0668 0.1020 0.2313 0.002 7fip:A, 7fip:B, 7fip:C, 7fip:D, 7fiq:C, 7fiq:B, 7fiq:A, 7fiq:D, 7fir:A, 7fir:B, 7fir:D, 7fis:C, 7fis:B, 7fis:A, 7fis:D
18 6ccg:A 72 68 0.0409 0.2639 0.2794 0.18 6cc8:A, 6cc8:B, 6ccg:B, 6ceu:A, 6ceu:B, 6cev:A, 6cev:B
19 7q86:A 612 37 0.0388 0.0294 0.4865 2.7 7q86:B
20 6ha8:8 212 58 0.0345 0.0755 0.2759 2.7
21 2qm9:A 139 52 0.0366 0.1223 0.3269 4.0
22 7xhn:I 517 49 0.0259 0.0232 0.2449 5.0
23 6v7w:E 234 51 0.0366 0.0726 0.3333 5.6 6d6a:A, 6d6a:B, 6d6a:C, 6d6a:D, 6d6a:E, 6d6a:F, 6d6a:G, 6d6a:H, 6d6b:A, 6d6b:B, 6d6b:C, 6d6b:D, 6d6b:E, 6d6b:F, 6d6b:G, 6d6b:H, 6d6c:A, 6d6c:B, 6d6c:C, 6d6c:D, 6d6c:E, 6d6c:F, 6d6c:G, 6d6c:H, 6d6c:I, 6d6c:J, 6d6c:K, 6d6c:L, 6d6d:A, 6d6d:B, 6d6l:A, 6d6l:B, 6d6l:C, 6d6l:D, 6d6m:A, 6d6m:B, 6d6m:C, 6d6m:D, 6d6n:A, 6d6n:B, 6d6n:C, 6d6n:D, 6d6o:A, 6d6o:B, 6d6o:C, 6d6o:D, 6d6p:A, 6d6p:B, 6d6p:C, 6d6p:D, 3ix3:A, 3ix3:B, 3ix4:A, 3ix4:B, 3ix4:C, 3ix4:D, 3ix4:E, 3ix4:F, 3ix4:G, 3ix4:H, 3ix8:A, 3ix8:B, 3ix8:C, 3ix8:D, 3jpu:A, 3jpu:B, 3jpu:C, 3jpu:D, 3jpu:E, 6mvm:A, 6mvm:B, 6mvn:A, 6mvn:B, 6mwh:A, 6mwh:B, 6mwl:A, 6mwl:B, 6mww:A, 6mww:B, 6mwz:A, 6mwz:B, 4ng2:A, 4ng2:B, 4ng2:C, 4ng2:D, 2uv0:E, 2uv0:F, 2uv0:G, 2uv0:H, 6v7w:B, 6v7x:B
24 6czy:A 362 60 0.0409 0.0525 0.3167 6.0 6czy:B, 6czy:C, 6czy:D, 6czz:A, 6czz:B, 6czz:C, 6czz:D
25 7lwb:A 182 84 0.0603 0.1538 0.3333 7.1 7bwt:B, 4lhv:A, 4lhv:B, 4lhv:C, 4lhv:D, 4lhw:A, 4lhw:B, 4lhw:C, 4lhw:D, 4lhw:E, 4lhy:A, 4lhy:B, 4lhz:A, 4lhz:B, 4li0:A, 4li0:B, 3qbt:A, 3qbt:C, 3qbt:E, 3qbt:G, 6rir:A, 6rir:B, 6sq2:A, 6sq2:B, 6stf:A, 6stf:B, 6stf:C, 6stf:D, 6stf:E, 6stg:A, 6stg:B, 5szi:A, 3tnf:A, 6whe:A, 6whe:B, 6yx5:A, 6zsi:A, 6zsi:B, 6zsj:A, 6zsj:B
26 7qoo:I 618 49 0.0259 0.0194 0.2449 7.3
27 1is2:A 637 37 0.0366 0.0267 0.4595 8.0 2ddh:A, 1is2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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