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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QMMALTFITYIGCGLSSIFLSVTLVTYIAFEKIRRDYPSKILIQLCAALLLLNLIFLLDSWIALYNTRGFCIAVAVFLHY
FLLVSFTWMGLEAFHMYLALVKVFNTYIRKYILKFCIVGWGIPAVVVSIVLTISPDNYGIGNGTPDDFCWINSNVVFYIT
VVGYFCVIFLLNVSMFIVVLVQLCRIKKKKQLGAQRKTSIQDLRSIAGLTFLLGITWGFAFFAWGVNVTFMYLFAIFNTL
QGFFIFIFYCAAKENVRKQWR

The query sequence (length=261) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7xkd:R 261 261 1.0000 1.0000 1.0000 0.0 7wui:R, 7xke:R, 7xkf:R
2 7d76:R 265 257 0.3870 0.3811 0.3930 6.44e-49 7d77:R
3 8e3x:R 362 201 0.1992 0.1436 0.2587 2.53e-11 6m1i:A, 6p9y:R
4 8e3y:R 372 270 0.2720 0.1909 0.2630 6.74e-11 8e3z:R, 6vn7:R
5 6pb0:R 281 276 0.2797 0.2598 0.2645 8.46e-11 8gtg:A, 8gti:A, 8gtm:A, 4k5y:C
6 6lpb:R 331 248 0.2414 0.1903 0.2540 6.90e-10
7 6pb1:P 281 274 0.2682 0.2491 0.2555 5.72e-09
8 6wzg:R 379 205 0.1916 0.1319 0.2439 2.10e-08 7d3s:R, 6wi9:R
9 6nbh:R 379 207 0.2184 0.1504 0.2754 4.59e-08 8flt:R, 8ha0:R, 8haf:R, 8jr9:R, 6nbf:R, 6nbi:R
10 7wu4:R 286 271 0.2797 0.2552 0.2694 7.28e-08 7wu3:R, 7wu5:R
11 7vvo:R 302 252 0.2375 0.2053 0.2460 1.29e-07 8gw8:R
12 6fj3:A 562 120 0.1341 0.0623 0.2917 7.48e-06 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
13 6fj3:A 562 34 0.0460 0.0214 0.3529 4.3 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
14 8g2y:R 251 257 0.2605 0.2709 0.2646 7.64e-05
15 4z9g:A 421 154 0.1609 0.0998 0.2727 1.16e-04 4k5y:A, 4k5y:B, 4z9g:B, 4z9g:C
16 7tyn:R 373 201 0.1686 0.1180 0.2189 2.19e-04 9auc:R, 8f0j:R, 8f0k:R, 8f2b:R, 6niy:R, 7tyf:R, 7tyo:R, 7tyw:R, 7tyx:R, 7tyy:R, 7tzf:R
17 7vqx:R 361 204 0.1801 0.1302 0.2304 8.32e-04 7wbj:R
18 7knu:R 341 269 0.2490 0.1906 0.2416 0.003
19 7lci:R 393 206 0.1916 0.1272 0.2427 0.003 7c2e:R, 7duq:R, 7e14:R, 7evm:R, 7fim:R, 8jip:R, 8jir:R, 8jis:R, 7lcj:R, 7lck:R, 5nx2:A, 6orv:RP, 7s15:R, 7s1m:R, 7vbh:R, 7vbi:R, 6vcb:R, 6x19:R, 6x1a:R, 7x8r:R, 7x8s:R, 6xox:R
20 7f16:R 376 209 0.1916 0.1330 0.2392 0.003
21 7dur:R 371 206 0.1992 0.1402 0.2524 0.19 7lll:R, 7lly:R
22 6whc:R 371 206 0.1686 0.1186 0.2136 0.19 8jru:R, 8wg8:R
23 7fin:R 380 225 0.2222 0.1526 0.2578 0.28 7dty:R, 7fiy:R, 7rbt:R, 7vab:R, 8yw4:R
24 6wpw:R 398 206 0.1839 0.1206 0.2330 0.67 8fu6:R, 8jiq:R, 8jit:R, 8jiu:R, 6lmk:R, 6lml:R, 7v35:R
25 8jrv:R 319 200 0.1801 0.1473 0.2350 0.75
26 6kjv:B 424 166 0.1533 0.0943 0.2410 0.81 6kjv:A, 6kk1:A, 6kk1:B, 6kk7:A, 6kk7:B, 5vew:A, 5vew:B, 5vex:A, 5vex:B
27 2cfa:A 180 58 0.0690 0.1000 0.3103 1.3 2cfa:B, 4fzb:H, 4fzb:J, 4fzb:N
28 7vrj:3 65 41 0.0575 0.2308 0.3659 3.4 8wdu:3, 8wdv:3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218