Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QMMALTFITYIGCGLSSIFLSVTLVTYIAFEKIRRDYPSKILIQLCAALLLLNLIFLLDSWIALYNTRGFCIAVAVFLHY
FLLVSFTWMGLEAFHMYLALVKVFNTYIRKYILKFCIVGWGIPAVVVSIVLTISPDNYGIDFCWINSNVVFYITVVGYFC
VIFLLNVSMFIVVLVQLCRIKKKKQLGDLRSIAGLTFLLGITWGFAFFAWNVTFMYLFAIFNTLQGFFIFIFYCAAKENV
RKQWR

The query sequence (length=245) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7xkd:R 261 261 1.0000 0.9387 0.9387 3.95e-170 7wui:R, 7xke:R, 7xkf:R
2 7d76:R 265 252 0.4000 0.3698 0.3889 9.66e-47 7d77:R
3 6lpb:R 331 237 0.2653 0.1964 0.2743 7.25e-11
4 8e3y:R 372 222 0.2490 0.1640 0.2748 1.06e-10 8e3z:R, 6vn7:R
5 8e3x:R 362 195 0.2122 0.1436 0.2667 1.68e-10 6m1i:A, 6p9y:R
6 6pb0:R 281 264 0.2694 0.2349 0.2500 2.62e-09 8gtg:A, 8gti:A, 8gtm:A, 4k5y:C
7 7vvo:R 302 237 0.2408 0.1954 0.2489 3.66e-09 8gw8:R
8 7wu4:R 286 262 0.2857 0.2448 0.2672 6.66e-08 7wu3:R, 7wu5:R
9 6nbh:R 379 198 0.2122 0.1372 0.2626 1.22e-07 8flt:R, 8ha0:R, 8haf:R, 8jr9:R, 6nbf:R, 6nbi:R
10 6pb1:P 281 262 0.2612 0.2278 0.2443 2.13e-07
11 6wzg:R 379 197 0.2082 0.1346 0.2589 4.18e-07 7d3s:R, 6wi9:R
12 8g2y:R 251 242 0.2653 0.2590 0.2686 5.12e-06
13 7knu:R 341 189 0.1959 0.1408 0.2540 1.86e-05
14 6fj3:A 562 133 0.1592 0.0694 0.2932 2.05e-05 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
15 6fj3:A 562 39 0.0571 0.0249 0.3590 2.3 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
16 7tyn:R 373 196 0.2000 0.1314 0.2500 4.61e-05 9auc:R, 8f0j:R, 8f0k:R, 8f2b:R, 6niy:R, 7tyf:R, 7tyo:R, 7tyw:R, 7tyx:R, 7tyy:R, 7tzf:R
17 7vqx:R 361 190 0.1878 0.1274 0.2421 7.40e-05 7wbj:R
18 7f16:R 376 193 0.2000 0.1303 0.2539 3.70e-04
19 4z9g:A 421 142 0.1429 0.0831 0.2465 0.001 4k5y:A, 4k5y:B, 4z9g:B, 4z9g:C
20 7dur:R 371 194 0.2000 0.1321 0.2526 0.009 7lll:R, 7lly:R
21 8jrv:R 319 185 0.1878 0.1442 0.2486 0.049
22 6whc:R 371 190 0.1796 0.1186 0.2316 0.071 8jru:R, 8wg8:R
23 7fin:R 380 216 0.2367 0.1526 0.2685 0.077 7dty:R, 7fiy:R, 7rbt:R, 7vab:R, 8yw4:R
24 7lci:R 393 198 0.2082 0.1298 0.2576 0.078 7c2e:R, 7duq:R, 7e14:R, 7evm:R, 7fim:R, 8jip:R, 8jir:R, 8jis:R, 7lcj:R, 7lck:R, 5nx2:A, 6orv:RP, 7s15:R, 7s1m:R, 7vbh:R, 7vbi:R, 6vcb:R, 6x19:R, 6x1a:R, 7x8r:R, 7x8s:R, 6xox:R
25 4iuw:A 630 61 0.0653 0.0254 0.2623 0.33
26 6kjv:B 424 156 0.1551 0.0896 0.2436 0.76 6kjv:A, 6kk1:A, 6kk1:B, 6kk7:A, 6kk7:B, 5vew:A, 5vew:B, 5vex:A, 5vex:B
27 2cfa:A 180 58 0.0735 0.1000 0.3103 0.92 2cfa:B, 4fzb:H, 4fzb:J, 4fzb:N
28 6wpw:R 398 192 0.1673 0.1030 0.2135 1.00 8fu6:R, 8jiq:R, 8jit:R, 8jiu:R, 6lmk:R, 6lml:R, 7v35:R
29 7cz5:R 269 172 0.1551 0.1413 0.2209 3.7 7v9m:R
30 7vrj:3 65 41 0.0612 0.2308 0.3659 4.0 8wdu:3, 8wdv:3

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218