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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QMLSKNMLLGGFDTGNIKAKISFLNEKGNIESFAIPTVIAEAPPAKIKDEDIELLHVRIISNSLDGDARSRAWYVGAYAK
DQEDRQEPQKNKKLHLIPLFTSMAVAAARIGKEEVSVPFSGGMPGEEQILEMLYGEHTVEFLDGTYEGKKIKITINDGTM
NVEGVSSVLAILFDIVNGEIVEAEIGESYAINDLGAGTSDNAFFEDGELNKKLSTNTDLGTNKYIDEILKNIKERFMPFK
TREDFIQRLVMPEVEKMIEDDTYKPTFSVKWGDVKENVTDIVMDGMLKYAEDQKASLMKFWFKTNADKNIVVGGGVLFGY
AGLRDLKEQDGFILPKNIQESAYFTSRSYLIANLLEQLNEQMLSKNMLLGGFDTGNIKAKISFLNEKGNIESFAIPTVIA
EAPPAKIKDEDIELLHVRIISNSLDGDARSRAWYVGAYAKDQEDRQEPTVQKNKKLHLIPLFTSMAVAAARIGKEEVSVP
FSGGMEQILEMLYGEHTVEFLDGTYEGKKIKITINDGTMNVEGVSSVLAILFDIVNGEIVEVEGGESYAINDLGAGTSDN
AFFEDGELNLSTNTDLGTNKYIDEILKNIKERFMENEIIESPFKTREDFIQRLVMPEVEKMIEDDTYKPTFSVKWGPVKE
NVTDIVMDGMLKYAEDQKASLDKFWDKTNADKNIVVGGGVLFGYAGLRDLKEQDGFILPKNIQESAYFTSRSYLIANLLE
QLN

The query sequence (length=723) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4xhp:A 723 723 1.0000 1.0000 1.0000 0.0
2 4xho:A 369 373 0.4910 0.9621 0.9517 0.0 4xe8:A, 4xhn:A
3 4xho:A 369 369 0.4841 0.9485 0.9485 0.0 4xe8:A, 4xhn:A
4 7kzv:V 1155 168 0.0664 0.0416 0.2857 0.003 8a9k:B
5 7kzv:V 1155 173 0.0609 0.0381 0.2543 0.16 8a9k:B
6 6vaa:B 1153 168 0.0664 0.0416 0.2857 0.003
7 6vaa:B 1153 173 0.0609 0.0382 0.2543 0.16
8 6bqw:A 275 234 0.0761 0.2000 0.2350 0.007 6bqw:B, 6bqw:C, 6bqw:D, 6bqw:E, 6bqw:F, 6bqw:G, 6bqw:H, 6bqw:I, 6f95:A, 6f95:B, 6f95:C, 6f95:D, 6f95:E
9 6bqw:A 275 215 0.0733 0.1927 0.2465 1.8 6bqw:B, 6bqw:C, 6bqw:D, 6bqw:E, 6bqw:F, 6bqw:G, 6bqw:H, 6bqw:I, 6f95:A, 6f95:B, 6f95:C, 6f95:D, 6f95:E
10 3h1q:B 272 72 0.0304 0.0809 0.3056 0.46 3h1q:A
11 7bvy:A 333 57 0.0221 0.0480 0.2807 0.67 7bvz:A
12 7bvy:A 333 79 0.0332 0.0721 0.3038 4.6 7bvz:A
13 6pc1:B 483 126 0.0415 0.0621 0.2381 1.7 6pc1:A, 6pc1:C, 6pc1:D, 6pc2:A, 6pc2:B, 6pc3:A, 6pc3:B
14 8a0p:A 216 106 0.0373 0.1250 0.2547 6.1 8a08:A, 8a0i:A, 8a0o:A, 8a0q:A, 8a0r:A, 7zvp:A, 7zzn:A
15 8e3s:A 503 125 0.0456 0.0656 0.2640 8.5 8fzr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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