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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QLRLPSPEVYRFVVKDSEENIVFEIPIIKGGTVVKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLLIERFEIPEP
EAIEKGEQPISADLKRFRKEYVQPVQLRILNVFRHWVEHHFYDFERDLYLLERLESFISSVRGKAMKKWVESIAKIIRRK
KQAQANGVSTFESPPPPIEWHISKPGHIETFDLMTLHPIEIARQLTLLESDLYRKVQPSELVGSVWTKEDKEINSPNLLK
MIRHTTNLTLWFEKCIVEAENFEERVAVLSRIIEILQVFQDLNNFNGVLEIVSAVNSVSVYRLDHTFEALQERKRKILDE
AVELSQFKKYLVKLKSINPPCVPFFGIYLTNILKTEEGNNDFLTRHGKDLINFSKRRKVAEITGEIQQYQNQPYCLRIEP
DMRRFFENLNPMGSASEKEFTDYLFNKSLEIEPRNPKQPPRFPRKSTFSLKSPGIRP

The query sequence (length=457) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8t5m:A 463 466 0.9716 0.9590 0.9528 0.0 8t5g:A, 8t5r:A, 8uc9:A, 8uh0:A
2 8xjj:A 473 470 0.8271 0.7992 0.8043 0.0 7avi:A, 7avi:B, 7avl:A, 7avl:B, 7avs:A, 7avs:B, 7avt:A, 7avt:B, 7avu:A, 7avu:B, 7avv:A, 6bvi:B, 6bvj:B, 6bvk:B, 6bvl:B, 6bvm:B, 6cuo:B, 6cup:B, 6cur:B, 6d55:B, 6d56:B, 6d59:B, 6d5e:B, 6d5g:B, 6d5h:B, 6d5j:B, 6d5l:B, 6d5m:S, 6d5v:S, 6d5w:S, 6epm:S, 6epn:S, 6epo:S, 6epp:S, 4nyi:S, 4nyj:S, 4nym:S, 5ove:A, 5ovf:A, 5ovg:A, 5ovh:A, 5ovi:A, 6scm:A, 6sfr:A, 6sfr:B, 7uks:A, 4urz:S, 6v94:B, 6v9f:B, 6v9j:B, 6v9l:B, 6v9m:B, 6v9n:B, 6v9o:B, 5wfo:N, 5wfp:N, 5wfq:N, 5wfr:N
3 4urw:S 453 467 0.8096 0.8168 0.7923 0.0 8be6:S, 8be7:S, 8be8:S, 8be9:S, 8bea:S, 7ukr:A, 7ukr:B, 4uru:S, 4urv:S, 4urx:S, 4ury:S
4 4mgz:E 632 244 0.1357 0.0981 0.2541 8.16e-18 3cf6:E, 4mgi:E, 4mgk:E, 4mgy:E, 4mh0:E
5 4l9m:A 522 380 0.1772 0.1552 0.2132 6.25e-10
6 3dls:A 285 91 0.0635 0.1018 0.3187 0.18 3dls:C, 3dls:B, 3dls:D, 3dls:E, 3dls:F
7 7aer:B 133 42 0.0350 0.1203 0.3810 2.6 7aer:C, 7bxo:H, 6m6v:B, 6m6v:C, 6m6v:D
8 6vly:A 293 25 0.0219 0.0341 0.4000 3.6 6vly:B, 6vly:C, 6vly:D
9 3nzp:B 591 65 0.0416 0.0321 0.2923 4.1 3nzp:A
10 1iwp:A 555 90 0.0416 0.0342 0.2111 4.7 1iwp:L, 1mmf:A, 1mmf:L
11 7v4y:A 402 34 0.0284 0.0323 0.3824 8.6
12 7cfs:A 426 43 0.0328 0.0352 0.3488 9.7 7cfs:B, 7cfs:C, 6cmc:A, 4ntw:A, 4ntx:A, 2qts:C, 2qts:B, 2qts:A, 2qts:D, 2qts:E, 2qts:F, 6x9h:A, 6x9h:B, 6x9h:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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