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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QLPWKVLGKSLGLPTIEQEQYWLNTAPYFNNLLIQCGYDVHQQYQYLAFYHRHVLPVLGPFIRSSAEANYISGFSAEGYP
MELSVNYQASKATVRLGCEPVGEFAGTSQDPMNQFMTREVLGRLSRLDPTFDLRLFDYFDSQFSLTTSEANLAASKLIKQ
RRQSKVIAFDLKDGAIIPKAYFFLKGKSLASGIPVQDVAFNAIESIAPKQIESPLRVLRTFVTKLFTSDVFILAVDCIVP
EKSRIKLYVADSQLSLATLREFWTLGGSVTDSATMKGLEIAEELWRILQYQLPLVVNYELSSGSATPKPQLYLPLHGRND
EAMANALTKFWDYLGWKGLAAQYKKDLYANNPCRNLAETTTVQRWVAFSYTESGGAYLTVYFHAVGGMKGNL

The query sequence (length=392) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ld7:A 397 397 1.0000 0.9874 0.9874 0.0 4ld7:B, 4ld7:C, 4ld7:D, 4ld7:E, 4ld7:F, 4ld7:G, 4ld7:H, 4ld7:I, 4ld7:J, 4ld7:K, 4ld7:L, 4ld7:M, 4ld7:N, 4ld7:O, 4ld7:P
2 5kd6:A 400 397 0.4286 0.4200 0.4232 5.59e-114 5kcl:A, 5kcl:B, 5kcq:A, 5kcq:B, 5kcy:A, 5kcy:B, 5kd0:A, 5kd0:B, 5kd6:B, 5kda:A, 5kda:B
3 6vya:C 387 390 0.3265 0.3307 0.3282 1.14e-68 6vya:A, 6vya:V, 6vya:E, 6vya:G, 6vya:B, 6vya:D, 6vya:F, 6vya:H, 6vya:I, 6vya:J, 6vya:K, 6vya:L, 6vya:M, 6vya:N, 6vya:O, 6vya:P, 6vya:Q, 6vya:R, 6vya:S, 6vya:T, 6vya:U, 6vya:W, 6vya:X
4 3o2k:A 429 414 0.3240 0.2960 0.3068 1.31e-64
5 4e0u:A 408 402 0.3240 0.3113 0.3159 3.11e-60 4e0u:B, 7xvj:A, 7xvj:B, 7xvj:C, 7xvj:D, 7y3v:A, 7y3v:B, 7y3v:C, 7y3v:D
6 3i4z:A 438 410 0.3189 0.2854 0.3049 6.53e-59 3i4x:A, 3i4x:B, 3i4z:B
7 8day:A 398 394 0.2730 0.2688 0.2716 1.28e-29 8daz:A, 8daz:C, 8db0:A, 8db0:B, 8db0:C, 8db0:D, 8db1:A
8 4yzl:A 361 256 0.1556 0.1690 0.2383 8.95e-04
9 1r9p:A 134 46 0.0357 0.1045 0.3043 3.2
10 6ncn:A 141 32 0.0306 0.0851 0.3750 4.3 6nco:A
11 6zhe:A 3768 160 0.0944 0.0098 0.2313 6.7
12 4re6:A 577 44 0.0255 0.0173 0.2273 7.0 2hu5:A, 2hu5:B, 2hu7:A, 2hu7:B, 2hu8:A, 2hu8:B, 4re5:A, 4re5:B, 4re6:C, 1ve7:A, 1ve7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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