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BioLiP
>protein
QLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGD

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3jxb:C 67 65 1.0000 0.9701 1.0000 5.49e-43 3jxb:D, 3jxc:L, 3jxc:R, 3jxd:L, 3jxd:R, 2r1j:L, 2r1j:R
2 4j1x:C 195 37 0.1692 0.0564 0.2973 0.077 2bnm:A, 2bnm:B, 2bnn:A, 2bnn:B, 2bno:A, 2bno:B, 4j1w:A, 4j1w:B, 4j1w:C, 4j1x:A, 4j1x:B, 3scf:A, 3scf:B, 3scf:C, 3scg:A, 3scg:B, 3scg:C, 3sch:A, 3sch:B, 1zz7:A, 1zz7:B, 1zz8:A, 1zz8:B, 1zz8:C, 1zz9:A, 1zz9:B, 1zz9:C, 1zzb:A, 1zzb:B, 1zzc:A, 1zzc:B
3 8a0x:A 103 57 0.2000 0.1262 0.2281 0.36 8a0w:A, 8a0w:B, 8a0x:B
4 8tac:B 66 52 0.2462 0.2424 0.3077 0.48
5 1b0n:A 103 62 0.2923 0.1845 0.3065 0.60 3zkc:A, 3zkc:B
6 4ao7:A 223 64 0.3077 0.0897 0.3125 0.99
7 6cgv:M 303 47 0.2154 0.0462 0.2979 1.6
8 6w1a:A 274 52 0.2615 0.0620 0.3269 3.5 6w1a:B, 4yv9:A, 4yv9:B, 4yv9:C, 4yv9:D
9 7rml:A 281 39 0.2308 0.0534 0.3846 4.2 7rml:B, 7rml:C
10 6yl2:B 192 45 0.2615 0.0885 0.3778 4.6 6yl2:A
11 6fix:B 99 61 0.2462 0.1616 0.2623 5.9 6fix:A, 6fix:D, 6fix:E
12 1q23:B 217 35 0.1846 0.0553 0.3429 5.9 1q23:A, 1q23:C, 1q23:D, 1q23:E, 1q23:F, 1q23:G, 1q23:H, 1q23:I, 1q23:J, 1q23:K, 1q23:L, 3u9f:A, 3u9f:B, 3u9f:C, 3u9f:D, 3u9f:E, 3u9f:F, 3u9f:G, 3u9f:H, 3u9f:I, 3u9f:J, 3u9f:K, 3u9f:L, 3u9f:M, 3u9f:N, 3u9f:O, 3u9f:P, 3u9f:R, 3u9f:S
13 7bc4:B 2054 43 0.2154 0.0068 0.3256 8.9
14 4cn1:A 649 13 0.1385 0.0139 0.6923 9.4 4cn1:B, 4cn4:A, 4cn4:B, 4cn6:A, 4cn6:B, 5cvs:A, 5cvs:B, 8d6k:B, 8d6k:A, 5lgv:A, 5lgv:B, 5lgw:A, 5lgw:B, 7mel:A, 7mel:B, 7mgy:A, 7mgy:B, 4u2y:A, 4u2y:B, 4u2z:A, 4u2z:B, 4u31:A, 4u31:B, 7uvd:B, 7uvd:A, 5vsj:A, 5vsj:B, 5vt4:A, 5vt4:B, 5vt4:C, 5vt4:D, 3zst:A, 3zst:B, 3zt5:A, 3zt5:B, 3zt5:C, 3zt5:D, 3zt6:A, 3zt6:B, 3zt6:C, 3zt6:D, 3zt7:B, 3zt7:A, 3zt7:D, 3zt7:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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