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BioLiP
>protein
QLKSQIQQYLVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFTQILSTVEPKALEMVSDSTRETVLKQIR
EFLEEI

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3kik:A 94 86 1.0000 0.9149 1.0000 1.36e-57 4c31:B, 4c31:E, 3kik:B, 3kik:D, 3kik:C, 3kjl:A, 3kjl:B, 3kjl:C, 3kjl:D, 4mbe:F, 4mbe:C
2 2a81:A 235 37 0.1395 0.0511 0.3243 1.1
3 5e3x:A 489 32 0.1395 0.0245 0.3750 3.8
4 8v83:b 423 33 0.1395 0.0284 0.3636 4.7 6elz:b, 6em1:b, 6em5:b, 7ohp:b, 7ohr:b, 7ohs:b, 7ohu:b, 7ohv:b, 8v84:b
5 7ohy:b 375 33 0.1395 0.0320 0.3636 5.4
6 4b7f:A 515 42 0.1279 0.0214 0.2619 5.8 4b7f:B, 4b7f:C, 4b7f:D, 4b7g:A, 4b7g:B, 4b7g:C, 4b7g:D, 4b7h:A, 4b7h:B, 4b7h:C, 4b7h:D
7 6ylg:b 613 33 0.1395 0.0196 0.3636 6.4 7nac:b, 7of1:b, 7r7a:b, 6ylh:b
8 5j6f:A 352 32 0.1163 0.0284 0.3125 6.8 5j6f:B
9 8hfr:rA 647 33 0.1395 0.0185 0.3636 6.9 7bt6:b, 7btb:b, 6c0f:W, 6ft6:b, 3jct:b, 5jcs:o, 6m62:b, 6n8j:b, 6n8k:b, 7nad:b, 7oh3:b, 7ohq:b, 7oht:b, 7r72:b, 7u0h:b, 7ug6:b, 7uoo:b, 7uqb:b, 7uqz:b, 7v08:b, 4v7f:o, 8v87:b, 6ylx:b, 6yly:b, 7z34:b
10 7mqa:LO 819 50 0.1628 0.0171 0.2800 7.0
11 7mq8:LO 848 50 0.1628 0.0165 0.2800 7.0 7mq9:LO
12 6j72:A 561 48 0.1279 0.0196 0.2292 7.4
13 3ce2:A 595 21 0.1163 0.0168 0.4762 8.8
14 7ohw:b 259 27 0.1279 0.0425 0.4074 9.4
15 4y9v:A 603 57 0.1628 0.0232 0.2456 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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