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BioLiP
>protein
QLKLEQKIKMKMAKKIRLRRTGLCAKESLRKRGAWPPSKMKKLKNV

The query sequence (length=46) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5mlc:7 46 46 1.0000 1.0000 1.0000 4.19e-26
2 6eri:Aw 49 46 0.8696 0.8163 0.8696 4.33e-12 5mmi:6, 5mmm:6, 5x8p:6, 5x8t:6
3 5h1s:g 43 25 0.5435 0.5814 1.0000 0.006
4 7vtq:A 789 38 0.2174 0.0127 0.2632 3.2 7vtq:B, 7vtq:C, 7vtq:D, 7vtq:E, 7vtq:F, 7vtq:G, 7vtq:H, 7vtq:I, 7vtq:J, 7vtq:K, 7vtq:L
5 6bli:D 221 16 0.1304 0.0271 0.3750 3.9 6bli:G, 6bli:J
6 4rxl:A 229 27 0.2174 0.0437 0.3704 4.5
7 1amf:A 231 14 0.1957 0.0390 0.6429 6.4 3axf:A, 3axf:B, 3axf:C, 3r26:A, 1wod:A, 4xxu:A, 4xxu:B
8 8k8l:A 231 14 0.1957 0.0390 0.6429 7.0
9 2y6p:B 233 21 0.1957 0.0386 0.4286 8.7 2y6p:A, 2y6p:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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