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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
QLDKEQVRKAVDALLTHCKSRKNNYGLLLNENESLFLMVVLWKIPSKELRVRLTLPHSIRSDSEDICLFTKDEPNSTPEK
TEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKN
LSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSSFV

The query sequence (length=239) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fkp:SL 243 239 1.0000 0.9835 1.0000 1.46e-176 8fkq:SL, 8fkr:SL, 8fks:SL, 8fkt:SL, 8fku:SL, 8fkv:SL, 8fkw:SL, 8fkx:SL, 8fky:SL, 8fkz:SL, 8fl2:SL, 8fl6:SL, 8fla:SL, 8fld:SL, 8ine:u, 8inf:u, 8ipx:N, 8ipy:c, 8ir3:s
2 8i9p:CB 269 270 0.3138 0.2788 0.2778 2.19e-27 8i9r:CB, 8i9t:CB, 8i9v:CB, 8i9w:CB, 8i9x:CB, 8i9y:CB, 8i9z:CB, 8ia0:CB, 8pv1:CB, 8pv3:CB, 8pv4:CB, 8pv7:CB, 8pvk:CB, 6rxt:UZ, 6rxu:UZ, 6rxv:UZ, 6rxy:UZ, 6rxz:UZ
3 8esq:K 251 244 0.3054 0.2908 0.2992 1.12e-26 8esr:K, 8etg:K, 8eth:K, 8eti:K, 8eup:K, 8euy:K, 8ev3:K
4 5jpq:k 182 235 0.2887 0.3791 0.2936 5.86e-19 5oql:Q
5 7d5s:RI 252 195 0.2301 0.2183 0.2821 9.62e-09 7ajt:UZ, 6ke6:RI, 6lqp:RI, 6lqu:RI, 7suk:SN, 5wlc:SN, 5wyj:U5, 5wyk:U5, 5ydt:U5, 6zqa:UZ, 6zqb:UZ, 6zqc:UZ
6 7r6q:K 286 167 0.1883 0.1573 0.2695 2.87e-07 7btb:K, 6c0f:K, 6cb1:K, 8e5t:K, 6elz:K, 6em1:K, 6em3:K, 6em4:K, 6em5:K, 3jct:K, 6m62:K, 7nac:K, 7ohp:K, 7ohq:K, 7ohr:K, 7ohs:K, 7ohv:K, 7ohw:K, 7ohx:K, 7r7a:K, 7u0h:K, 7uoo:K, 7uqb:K, 7uqz:K, 7v08:K, 8v83:K, 8v84:K, 8v87:K, 6ylx:K, 6yly:K, 5z3g:H
7 8pv4:Lr 214 107 0.1255 0.1402 0.2804 1.84e-05 8i9r:Lq, 8i9t:Lq, 8i9v:Lq, 8i9w:Lq, 8i9x:Lq, 8i9y:Lq, 8i9z:Lq, 8ia0:Lq, 8pv6:Lr, 8pv8:Lt, 8pvk:Lr
8 4v4n:AA 216 237 0.2510 0.2778 0.2532 2.87e-05 4v6u:BA
9 4v8m:BJ 214 117 0.1172 0.1308 0.2393 4.93e-05
10 7a01:42 217 104 0.1046 0.1152 0.2404 3.30e-04 5aj0:Au, 8bhf:l1, 8btk:Bv, 6d90:K, 6d9j:K, 8fku:BB, 8fkv:BB, 8fkw:BB, 8fkx:BB, 8fky:BB, 8fl2:BB, 8fl3:BB, 8fl4:BB, 8g5y:Lz, 8g5z:Lz, 8g60:Lz, 8g61:Lz, 8g6j:Lz, 6gz3:Au, 6gz4:Au, 6gz5:Au, 6hcf:u3, 6hcj:w3, 6hcm:u3, 6hcq:w3, 8idy:t, 8ifd:2l, 8ife:2l, 8inf:q, 6ip5:2l, 3j7r:z, 5lks:Lz, 7ls1:L1, 7ls2:L1, 6mtb:u, 6mtc:u, 6mtd:u, 7nwg:w3, 7o7y:Bv, 7o7z:Bv, 7o80:Bv, 7o81:Bv, 8ohd:Lz, 8oj0:Lz, 8oj5:Lz, 8oj8:Lz, 6olg:Au, 8p2k:Bv, 6p5i:AK, 6p5j:AK, 6p5k:AK, 6p5n:AK, 8q87:Bv, 7qgg:Cz, 6qzp:Lz, 6sgc:B, 5t2c:l, 4ug0:Lz, 4v6x:Cz, 8xsx:Lz, 6y6x:Lz, 6z6l:Lz, 6z6m:Lz, 6z6n:Lz, 7zjw:Lx, 6zm7:Lz, 6zme:Lz, 6zmi:Lz, 6zmo:Lz, 6zvk:42
11 4v6w:Cz 217 107 0.1213 0.1336 0.2710 0.001 6xu6:Cz, 6xu7:Cz, 6xu8:Cz
12 4v3p:LA 216 113 0.1088 0.1204 0.2301 0.006 4v7e:Cz
13 8brm:Ln 211 128 0.1172 0.1327 0.2188 0.026 8br8:Ln, 8bsi:Ln, 8bsj:Ln, 8btd:Ln, 8btr:Ln
14 7zjx:Lx 169 45 0.0586 0.0828 0.3111 0.027
15 8c3a:l1 217 113 0.1004 0.1106 0.2124 0.057 8c3a:L1, 8cq7:l1, 8cq7:L1, 8cqw:l1, 8cqw:L1, 8cre:l1, 8cre:L1, 8oeq:l1, 8oeq:L1
16 8bqd:BT 217 113 0.1004 0.1106 0.2124 0.16 8aaf:w, 8agt:w, 8agu:w, 8agv:w, 8agw:w, 8agx:w, 8agz:w, 8bn3:B, 8bqx:BT, 8eub:E, 8evp:E, 8evq:E, 8evr:E, 8evs:E, 8evt:E, 8ewb:E, 8ewc:E, 6gqb:BA, 6gqv:BA, 8hfr:As, 5it7:qq, 3j0l:B, 3j0o:B, 3j0p:B, 3j0q:B, 3j6x:L1, 3j6y:L1, 3j77:L1, 3j78:L1, 5jcs:I, 8k2d:L1, 8k82:L1, 7nac:a, 2noq:G, 6oig:z, 7r7a:a, 7r7c:a, 6r84:L, 6r86:L, 6r87:L, 6tb3:BT, 6uz7:Bq, 4v4b:BA, 4v6i:BA, 4v7h:BA, 4v7r:BA, 4v7r:DA, 8v83:a, 8v84:a, 8v87:a, 4v91:t, 6woo:q, 6xiq:L1, 7zw0:LB
17 3wir:A 756 153 0.1715 0.0542 0.2680 0.62 3wiq:A, 3wir:B, 3wir:C, 3wir:D
18 1u63:A 214 240 0.2134 0.2383 0.2125 0.73 1i2a:A, 1u63:C
19 8xqw:E 868 193 0.2092 0.0576 0.2591 1.1
20 5llw:B 673 171 0.1548 0.0550 0.2164 2.7 5llw:A, 5llx:A, 5llx:B, 5lly:D, 5lly:A, 5lly:C, 5lly:B, 6saw:A, 6saw:B, 6saw:C, 6saw:D, 6saw:E, 6saw:F, 6saw:G, 6saw:H, 6sax:B, 6sax:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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