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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
QKTYIPWSNGKLVVSEEGRYLKHENGTPFFWLGETGWLLPERLNRDEAEYYLEQCKRRGYNVIQVQTLNNVPSMNIYGQY
SMTDGYNFKNINQKGVYGYWDHMDYIIRTAAKKGLYIGMVCIWGSPVSHGEMNVDQAKAYGKFLAERYKDEPNIIWFIGG
DIRGDVKTAEWEALATSIKAIDKNHLMTFHPRGRTTSATWFNNAPWLDFNMFQSGHRRYGQRFGDGDYPIEENTEEDNWR
FVERSMAMKPMKPVIDGEPIYEEIPHGLHDENELLWKDYDVRRYAYWSVFAGSFGHTYGHNSIMQFIKPGVGGAYGAKKP
WYDALNDPGYNQMKYLKNLMLTFPFFERVPDQSVIAGQNGERYDRAIATRGNDYLMVYNYTGRPMEVDFSKISGAKKNAW
WYTTKDGKLEYIGEFDNGVHKFQHDSGYSSGNDHVLIVVDSSKDYVKKDCYQIDTHE

The query sequence (length=457) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5msy:A 457 457 1.0000 1.0000 1.0000 0.0 5msy:B, 5msy:C
2 2cks:B 306 103 0.0547 0.0817 0.2427 0.47 2ckr:B, 2ckr:A, 2cks:A
3 8r8r:A 1188 49 0.0328 0.0126 0.3061 0.54
4 1p4v:A 295 57 0.0372 0.0576 0.2982 0.65 9gac:A, 9gac:C, 9gaf:A, 9gaf:C, 2gl9:B, 2gl9:D, 3ljq:C, 1p4v:C, 4r4y:A
5 3amg:B 291 97 0.0547 0.0859 0.2577 0.68
6 3amg:A 311 97 0.0547 0.0804 0.2577 0.71 3aof:B, 3aof:A, 3azr:A, 3azr:B, 3azs:A, 3azs:B, 3azt:A, 3azt:D, 3mmw:A, 3mmw:B, 3mmw:C, 3mmw:D
7 6ykp:B 255 133 0.0700 0.1255 0.2406 0.75 6ykp:C, 6ykp:D, 6ykp:A, 6ykp:E, 6ykr:B, 6ykr:C, 6ykr:D, 6ykr:A, 6ykr:E
8 1ece:A 358 119 0.0766 0.0978 0.2941 1.4 1ece:B
9 3uj7:A 259 110 0.0656 0.1158 0.2727 1.5 4fgz:A, 4fgz:B, 4r6w:A, 4r6w:B, 4r6x:A, 4r6x:B, 3uj6:A, 3uj7:B, 3uj8:A, 3uj9:A, 3uja:A, 3ujb:A, 3ujb:B, 3ujc:A, 3ujd:A
10 7svm:A 852 137 0.0656 0.0352 0.2190 1.6 7a3g:B, 7a3g:A, 7a3i:B, 7a3i:C, 7a3j:C, 7a3j:A, 7a3j:B, 7a3k:C, 7a3k:A, 7a3k:B, 7a3l:A, 7a3l:B, 7a3l:C, 7ayq:B, 7ayr:A, 7ayr:B, 6eop:A, 6eop:B, 6eop:C, 6eot:A, 6eot:B, 6eot:D, 6eot:G, 6eot:I, 6eot:K, 6hp8:A, 6hp8:B, 6hp8:C, 7or4:B, 7or4:A, 7oz7:A, 7oz7:B, 6qzw:A, 6qzw:B, 6qzw:C, 7svm:B, 7svm:C, 7svo:A, 7svo:B, 7svo:C, 6trw:A, 6trw:B, 6trw:C, 6trx:B, 6trx:C, 6trx:A
11 4xzw:A 305 58 0.0372 0.0557 0.2931 2.8
12 7c79:K 104 36 0.0306 0.1346 0.3889 4.2 7c7a:K
13 7ayq:A 808 135 0.0635 0.0359 0.2148 4.2 7a3i:A
14 3f5f:A 656 67 0.0350 0.0244 0.2388 6.0 4ndz:A, 4ndz:B, 4ndz:C, 4ndz:D, 4ndz:E, 4ndz:F
15 6sg9:DH 472 57 0.0372 0.0360 0.2982 8.5 6sgb:DH

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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